Query= MSMg01no079_a18.b1 MSMg01no079_a18.b1 CHROMAT_FILE:
MSMg01no079_a18.b1 PHD_FILE: MSMg01no079_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:33 2005
(628 letters)
>mm_chr18_71816743_71817771
Length = 1029
Score = 1156 bits (598), Expect = 0.0
Identities = 607/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Plus
Query: 20 ttctctgaagaaattacaagcttatcttcagctgatgctctggattttactgcagattta 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttctctgaagaaattacaagcttatcttcagctgatgctctggattttactgcagattta 279
Query: 80 gatagtccacggggacactgggtcttttgagattcttgtgatgtgtactccaaaatagaa 139
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggtagtccacggggacactgggtcttttgagattcttgtgatgtgtactccaaaatagaa 339
Query: 140 tacaagaacatgaatatatctttgataaattgcggtaaacatgaagaatactgaagcatg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tacaagaacatgaatatatctttgataaattgcggtaaacatgaagaatactgaagcatg 399
Query: 200 gaaattcgtgaccttctaagtataattctttta-ttttttttattcctttgtggaagaaa 258
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 400 gaaattcgtgaccttctaagtataattcttttatttttttttattcctttgtggaagaaa 459
Query: 259 agaatgtaaaaccagggggtagatatgttgtcacaagtttcttcctaccagatgggagat 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agaatgtaaaaccagggggtagatatgttgtcacaagtttcttcctaccagatgggagat 519
Query: 319 ggtggcatgtcacttctgtttctctgaattcaaaatctaaagcaatccaagttttattac 378
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gatggcatgtcacttctgtttctctgaattcaaaatctaaagcaatccaagttttattac 579
Query: 379 aaaactaatctgcttttatcctaaccttaaatggagtccaagagtttaaatactctgatc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aaaactaatctgcttttatcctaaccttaaatggagtccaagagtttaaatactctgatc 639
Query: 439 ttaggctaacacacctagaggaagttgtaaatattcctaaaaaggacaataggttaacag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttaggctaacacacctagaggaagttgtaaatattcctaaaaaggacaataggttaacag 699
Query: 499 agaaactaggatttatatgattggtttaatttctaaactcttatgttaagtattcttcac 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agaaactaggatttatatgattggtttaatttctaaactcttatgttaagtattcttcac 759
Query: 559 atataattctgtgaataatatctttaaaaaaataaaagctccttaatcccactaccaaca 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 atataattctgtgaataatatctttaaaaaaataaaagctccttaatcccactaccaaca 819
Query: 619 aattcttccg 628
||||||||||
Sbjct: 820 aattcttccg 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_a18.g1 MSMg01no079_a18.g1 CHROMAT_FILE:
MSMg01no079_a18.g1 PHD_FILE: MSMg01no079_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:33 2005
(577 letters)
>mm_chr18_71973125_71974102
Length = 978
Score = 969 bits (501), Expect = 0.0
Identities = 531/547 (97%), Gaps = 14/547 (2%)
Strand = Plus / Minus
Query: 1 tttggagtcctcagtaatagccagcagacttggatcctctgttgacattatcatgtaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttggagtcctcagtaatagccagcagacttggatcctctgttgacattatcatgtaatt 482
Query: 61 ctctttttaatgatttcagaatagtcccctccaagtcagatagcagaagaagcttaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctctttttaatgatttcagaatagtcccctccaagtcagatagcagaagaagcttaagta 422
Query: 121 ggccaaaatttccatttaaaaggaagtgaaaagggagggaacctcaagaggaatagtcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggccaaaatttccatttaaaaggaagtgaaaagggagggaacctcaagaggaatagtcaa 362
Query: 181 aggtactgagttgctatgtgtagtgctgtgctccaaggcatc-tgaatagtccagggaag 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 361 aggtactgagttgctatgtgtagtgctgtgctccaaggcatcttgaatagtccagggaag 302
Query: 240 aactgtgtctgaccccgtaatcactatcttctttatccctgtttatatactgctctcttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aactgtgtctgaccccgtaatcactatcttctttatccctgtttatatactgctctcttt 242
Query: 300 gtttctaaggttgccagctctggggactggcagattagcttcaaaccaaaaccaaaccaa 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 gtttctaaggttgccagctctggggactggtagattagcttcaaaccaaaaccaaaccaa 182
Query: 360 accaaaccaaaccaaaccaaaccaaacc-------aaaccaaaccaaaccaaaaaaaaaa 412
|||||||||||||||||||||||||||| ||| ||| ||| ||||||||||
Sbjct: 181 accaaaccaaaccaaaccaaaccaaaccaaaaaaaaaa--aaa--aaa--aaaaaaaaaa 128
Query: 413 aaaaaagccaacatttttttttcaacagcaaaatctaaactgggttttagttgaagtaca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aaaaaagccaacatttttttttcaacagcaaaatctaaactgggttttagttgaagtaca 68
Query: 473 tttttattgttgcaatcaaattagaatcacgaataatggaattttgaatatattcatgag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 67 tttttattgttgcaatcaaattagaatcacgaataatggaattttgaatatatccatgag 8
Query: 533 ttttaca 539
|||||||
Sbjct: 7 ttttaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
