Query= MSMg01no079_k11.b1 MSMg01no079_k11.b1 CHROMAT_FILE:
MSMg01no079_k11.b1 PHD_FILE: MSMg01no079_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:20 2005
(614 letters)
>mm_chr18_42035400_42036413
Length = 1014
Score = 1137 bits (588), Expect = 0.0
Identities = 604/610 (99%), Gaps = 3/610 (0%)
Strand = Plus / Plus
Query: 7 gaattctctcactctggataatttcttgaagaaattgcattcctaccccctaatgatctt 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctctcactatggataatttcttgaagaaattgcattcctaccccctaatgatctt 266
Query: 67 cgaacaaagcaggcacctcattttattaagtccagctaccaagaggatccagttcagagt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cgaacaaagcaggcacctcattttattaagtccagctaccaagaggatccagttcagagt 326
Query: 127 ggaactgaagctacagccaaacgtgaggtcttaatcattctggtgggacagaactcttct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggaactgaagctacagccaaacgtgaggtcttaatcattctggtgggacagaactcttct 386
Query: 187 gtgttatcagacctcaccaagccagttccgaatgccagcggcaagaacaaacagatgtcg 246
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 387 gtgttatcagacctcaccaagccagttccaaatgccagcggcaagaacaaacagatgtcg 446
Query: 247 ggactatttgttttattcaaacgtgacaggaaatcaaaaatccatcaaacagatgtgtca 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggactatttgttttattcaaacgtgacaggaaatcaaaaatccatcaaacagatgtgtca 506
Query: 307 gcagcaatgccacaagcatattggttactgagatttatgtgcctccatttcagtccatga 366
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 507 gcagcaatgccacaagcatattggttactgagatttatgtgcctccatttcaatccatga 566
Query: 367 gaaaattaccttctaagctttctacatcttcaaatgtccagttggatgcacaggtcagag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaaaattaccttctaagctttctacatcttcaaatgtccagttggatgcacaggtcagag 626
Query: 427 agttcataaatgttacttctgatgctaggtaccaggaaaaatggaggcatatgctacatg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agttcataaatgttacttctgatgctaggtaccaggaaaaatggaggcatatgctacatg 686
Query: 487 aatgtaattttttttgagatagggttaactacatagccctgactagcctggaacacatag 546
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aatgtaattttttt-gagatagggttaactacatagccctgactagcctggaacacatag 745
Query: 547 agatgagtgtacatcttgagtgctgtgattaaagacatgtgttttaaaaatatgaaaaaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agatgagtgtacatcttgagtgctgtgattaaagacatgtgttttaaaaatatgaaaaaa 805
Query: 607 --tctatttt 614
||||||||
Sbjct: 806 aatctatttt 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_k11.g1 MSMg01no079_k11.g1 CHROMAT_FILE:
MSMg01no079_k11.g1 PHD_FILE: MSMg01no079_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:20 2005
(542 letters)
>mm_chr18_42162771_42163712
Length = 942
Score = 957 bits (495), Expect = 0.0
Identities = 507/511 (99%), Gaps = 2/511 (0%)
Strand = Plus / Minus
Query: 1 ttactgttgac-atttaaggtttttttttctgggtataagtaatgtcatggagaatatct 59
||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttactgttgacaattgaagg-ttttttttctgggtataagtaatgtcatggagaatatct 452
Query: 60 ttatctagataaatatttctctcctttgaaaattatttcctcaggagaaattattgggct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttatctagataaatatttctctcctttgaaaattatttcctcaggagaaattattgggct 392
Query: 120 gaaaggaatggatttttagaatttattttctgcctgattatcacagtaaggtgagtttat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaaaggaatggatttttagaatttattttctgcctgattatcacagtaaggtgagtttat 332
Query: 180 cattggcatgtaaaatataataaaactgggaaagaaaaaagtgttcagcatcctctgcct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cattggcatgtaaaatataataaaactgggaaagaaaaaagtgttcagcatcctctgcct 272
Query: 240 agaggttgatattagcgttttgacatgatttcttctgatataggcagttattttctttct 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agaggctgatattagcgttttgacatgatttcttctgatataggcagttattttctttct 212
Query: 300 tagtaagactcaagggtatgaacacttttaaggttttcgataatactgccaagattgctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tagtaagactcaagggtatgaacacttttaaggttttcgataatactgccaagattgctt 152
Query: 360 tcaagtctgtagtttattcttctgaaagtgtatgagttgcaaccactctgaaaacacaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tcaagtctgtagtttattcttctgaaagtgtatgagttgcaaccactctgaaaacacaaa 92
Query: 420 catctaaaacttgtcaagtgagcttgcttgtttccaaactctctacacctttgctgtgac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 catctaaaacttgtcaagtgagcttgcttgtttccaaactctctacacctttgctgtgac 32
Query: 480 tcactgaaagttcatgagcctgcctaggaag 510
|||||||||||||||||||||||||||||||
Sbjct: 31 tcactgaaagttcatgagcctgcctaggaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
