BAC Information

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BAC

Clone NameMSMg01-080E21
Chromosome18 (Build37)
Map Location 60,225,300 - 60,225,858
singlet/doubletsinglet
Overlap genenone
Upstream geneA730017C20Rik, 4833446K15Rik, LOC667549
Downstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080E21.T7 (MSMg01no080_e21.b1)MSMg01-080E21.TJ (MSMg01no080_e21.g1)
ACCAG301180AG301181
length695696
length of high quality
(start - end)
561 (42 - 602)561 (70 - 630)
definitionCHROMAT_FILE: MSMg01no080_e21.b1 PHD_FILE: MSMg01no080_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:10 2005CHROMAT_FILE: MSMg01no080_e21.g1 PHD_FILE: MSMg01no080_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTCTTTTTACTAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATT
TTTTGTATCCATTCCTCTGTTGAGAGACATCTGGGTTCTTTCCAGCTTCT
GGCTATTATAAATAAGGCTGTTATGAACATAGTGGAGCATGTGTCCTTCT
TACCAGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGA
TCCTCTGGTAGTACTATGTCCAATTTTCGGAGGAACCGCCAGACTGATTT
CCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTC
CTCTTTCTCCACATCCTTGCCAGCATGTGCTGTCACCTGAATTTTTGATC
TTAGCCATTCTGACTGCTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTG
CATTTCTCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGTTTCTCAG
CCTTTCGGTATTCCTCGGGTGAGAATTCTTTGTTCATCTCTGAGCCCCAT
CTTTTAAGGGGGCTATTTGATTTTCTGGAGTCCACTCTCTTGATTTCTTT
ATATATATTGGATATTAATCCCCTATCTGATTTAAGATAGGTAAAGGATT
CTTTTTCCCGACTTCCAACCCAAGTTATCAAAAAAGACAAGAGGG
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGTAATAAGAAAAAGGCTTTCCTTCATGTA
ACATGCAGTCCAGTGTGGCTGGTGGAGGAAAGGGGGCAATTAGGTTTGAA
AAACAAAAAAAAGTGGTCAGCGCCAGGTCCTAATGAGGCTTTTTCTCATC
TGACCTTTGCACAGAGGCCCAAAGACTTCATGTACTTCACACACCACTGA
GCAGAATACAAAGCCACTCACCAAGTCAGATGAGACTTATTAGCACAAAC
AGAAAAAAAAAAATCTCAGAATGTATCTCCTACTGATACAGGCTCAAGGG
CATCAGCATTGAATATTAACTACACTACATCAAAACAGCATTAGAGATTG
GTAAGACTGGGCTCCTGGTTGGACACATTTTCAGCCATTAACACAGAAGG
ATCAGAATGGCAAGCCCTGCTATGATTATTCCCCAGAGAGGACACAGCAG
ACACATGGCTTCAGCCTTCCTTTCCAGTAGCCCCACTGGCATTTCCAAAG
GTAGAAAACACGAAGGGGAGCCTATAAAGGAAGTGTTTTTCCTTACATGC
TGTGGCTTGGCATGCTCCTGAATATAAACACTGCAGAGTGTGCATTCGAT
CAGTAAAGATAAGGAGTCTTTAGATTTTCAGATCTTTGATTGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_e21.g1 MSMg01no080_e21.g1 CHROMAT_FILE:
MSMg01no080_e21.g1 PHD_FILE: MSMg01no080_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:10 2005
         (561 letters)



>mm_chr18_60225100_60226058
          Length = 959

 Score = 1050 bits (543), Expect = 0.0
 Identities = 556/561 (99%), Gaps = 2/561 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtaataagaaaaaggctttccttcatgtaacatgcagtccagtgtggctggtggagga 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 atgtaataagaaaaaggctttccttcatgttacatgcagtccagtgtggctggtggagga 260

                                                                       
Query: 61  aagggggcaattaggtttgaaaaacaaaaaaaagtggtcagcgccaggtcctaatgaggc 120
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggggcaattaggtttgaaaa--aaaaaaaagtggtcagcgccaggtcctaatgaggc 318

                                                                       
Query: 121 tttttctcatctgacctttgcacagaggcccaaagacttcatgtacttcacacaccactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttttctcatctgacctttgcacagaggcccaaagacttcatgtacttcacacaccactg 378

                                                                       
Query: 181 agcagaatacaaagccactcaccaagtcagatgagacttattagcacaaacagaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agcagaatacaaagccactcaccaagtcagatgagacttattagcacaaacagaaaaaaa 438

                                                                       
Query: 241 aaaatctcagaatgtatctcctactgatacaggctcaagggcatcagcattgaatattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaatctcagaatgtatctcctactgatacaggctcaagggcatcagcattgaatattaa 498

                                                                       
Query: 301 ctacactacatcaaaacagcattagagattggtaagactgggctcctggttggacacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctacactacatcaaaacagcattagagattggtaagactgggctcctggttggacacatt 558

                                                                       
Query: 361 ttcagccattaacacagaaggatcagaatggcaagccctgctatgattattccccagaga 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 559 ttcagccattaacacagaaggatcagaatggtaagccctgctatgattattccccagaga 618

                                                                       
Query: 421 ggacacagcagacacatggcttcagccttcctttccagtagccccactggcatttccaaa 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 619 ggacacagcagacacatggcttcagccttcctttccagtagacccactggcatttccaaa 678

                                                                       
Query: 481 ggtagaaaacacgaaggggagcctataaaggaagtgtttttccttacatgctgtggcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggtagaaaacacgaaggggagcctataaaggaagtgtttttccttacatgctgtggcttg 738

                                
Query: 541 gcatgctcctgaatataaaca 561
           |||||||||||||||||||||
Sbjct: 739 gcatgctcctgaatataaaca 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 959
Length adjustment: 10
Effective length of query: 551
Effective length of database: 949
Effective search space:   522899
Effective search space used:   522899
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)