Query= MSMg01no080_m24.b1 MSMg01no080_m24.b1 CHROMAT_FILE:
MSMg01no080_m24.b1 PHD_FILE: MSMg01no080_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:50 2005
(581 letters)
>mm_chr18_84896700_84897680
Length = 981
Score = 1079 bits (558), Expect = 0.0
Identities = 573/578 (99%)
Strand = Plus / Plus
Query: 4 ggaattctgagatatacgccgtcagagtcaagcagcggctgtaaatgcccggtcgtctcg 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgagatatacgcagtcagagtcaagcagcggctgtaaatgcccggtcgtctcg 263
Query: 64 gcctcgcttgacaccacatgtggccaaatgagtcatgaaagcttgtggcttccagtcagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcctcgcttgacaccacatgtggccaaatgagtcatgaaagcttgtggcttccagtcagc 323
Query: 124 ttttgggtttgaaattatttgcgtgtaagcaccaggagtttgttttcttgactttaaggc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttgggtttgaaattatttgcgtgtaagcaccaggagtttgttttcttgactttaaggc 383
Query: 184 acatcttataatcaactcagaaacaataaagctgactcatgtgaaactaccctcccgcct 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 acatcttataatcaactcagaaacaataaagctgactcatgtgaaactacccgcccgcct 443
Query: 244 ttgcaaagaacacgctggcatatctgatcgtggttcaaaggtcatcttgtttagcctggc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgcaaagaacacgctggcatatctgatcgtggttcaaaggtcatcttgtttagcctggc 503
Query: 304 cctgggttatacctcccttgtgtgcatctcaccgggctgtactgtcactgtcactctgta 363
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 cctgggttatacctcccttgtgtgcatctcaccgggctgcactgtcactgtcactctgta 563
Query: 364 aggaaggcagagcacctaagatacagaggaggagaaggaggccctgaccaggtaggaagc 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggaaggcagagcagctaagatacagaggaggagaaggaggccctgaccaggtaggaagc 623
Query: 424 acgctgggaatggcagcccagcagtcagacttcaggcttaaggctttccatccagtggtt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acgctgggaatggcagcccagcagtcagacttcaggcttaaggctttccatccagtggtt 683
Query: 484 tgttcagtgcgccacactgcacagtgtccacagatcatccaggccttttgcaatgagcaa 543
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 tgttcagtgcgccacactgcacagtgtccacaggtcatccaggccttttgcaatgagcaa 743
Query: 544 aacagggtgaaaagacactgagattttattcctgtctt 581
||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aacagggtgaaaagacactgagattttattcctgtctt 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_m24.g1 MSMg01no080_m24.g1 CHROMAT_FILE:
MSMg01no080_m24.g1 PHD_FILE: MSMg01no080_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:50 2005
(564 letters)
>mm_chr18_85024254_85025219
Length = 966
Score = 1071 bits (554), Expect = 0.0
Identities = 563/566 (99%), Gaps = 2/566 (0%)
Strand = Plus / Minus
Query: 1 ttcatctgtgaaaggtaagcagccacaaaaagcaaaacttcattcgtcaagaccccaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttcatctgtgaaaggtaagcagccacaaaaagcaaaacttcattcgtcaagaccccaaaa 707
Query: 61 aggctaagtgagtcagaagctaacagcctctgcaaggcgggatgctttcaatgaatattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aggctaagtgagtcagaagctaacagcctctgcaaggcgggatgctttcaatgaatattc 647
Query: 121 aagacttgctttaaaaatcgcagaatctcagcatcactaggaaaacattgtgtggggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aagacttgctttaaaaatcgcagaatctcagcatcactaggaaaacattgtgtggggagc 587
Query: 181 acagacaacttgccttcaacgcggcctaggagatgttacgggcacccac-gcccagaacg 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 586 acagacaacttgccttcaacgcggcctaggagatgttacgggcacccactgcccagaacg 527
Query: 240 gaaaggcaacaggagtcttacccgatgctctcttcctcccttccacagctctgcttaaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaaaggcaacaggagtcttacccgatgctctcttcctcccttccacagctctgcttaaac 467
Query: 300 ctggctcaaccacagaacagggaaatgcaaacttgctccttggcccttaacacctgtttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctggctcaaccacagaacagggaaatgcaaacttgctccttggcccttaacacctgtttt 407
Query: 360 cattccaaataatggtctctcggatttctatcatcactaacctgtctaatgccatgatct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cattccaaataatggtctctcggatttctatcatcactaacctgtctaatgccatgatct 347
Query: 420 tatataacaagactcaatttcataaatgtaaactcaaaacctagggggcaggactagggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tatataacaagactcaatttcataaatgtaaactcaaaacctagggggcaggactagggg 287
Query: 480 g-aaaaaaaggttcaaaatatctaggcaatgaggcttataatcctgtgggccgacgccag 538
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 286 gaaaaaaaaggttcaaaatatctaggcaatgaggcttataatcctgtgggcagacgccag 227
Query: 539 ctcgggacccaagccctgctgctgtt 564
||||||||||||||||||||||||||
Sbjct: 226 ctcgggacccaagccctgctgctgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 966
Length adjustment: 10
Effective length of query: 554
Effective length of database: 956
Effective search space: 529624
Effective search space used: 529624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
