Query= MSMg01no080_n24.b1 MSMg01no080_n24.b1 CHROMAT_FILE:
MSMg01no080_n24.b1 PHD_FILE: MSMg01no080_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:54 2005
(627 letters)
>mm_chr18_70985236_70986264
Length = 1029
Score = 1007 bits (521), Expect = 0.0
Identities = 600/631 (95%), Gaps = 13/631 (2%)
Strand = Plus / Plus
Query: 8 attc-acaatttatcacctgcttacctgctttccaatggaactgcagtctttgggggcac 66
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attcaacaatttagcaactgcttacctgctttccaatggaactgcagtctttgggggcac 258
Query: 67 gctatagcattatatcatttctcttacatacttagatttaaaaaaaa--------tccac 118
||||||| |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 259 actatagccttatatcatttctcttacatacttagattt-aaaaaaaaaaacaaatccac 317
Query: 119 atgtcagaccgttatatttatctcacacattttcatataacccaatccactttctactcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgtcagaccgttatatttatctcacacattttcatataacccaatccactttctactcc 377
Query: 179 cacttaaaccaaacaaacctttacttaaacaaccaatagagtcactgttgacactagctc 238
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 378 cacttaaaccaaacaaacctttacttaaacaaccaatagagtcactgtcgacactagctc 437
Query: 239 tgtaatgtaaaaatttgataagtggacgatccaggtctacacccatgacattccta-aag 297
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 438 tgtaatgcaaaaatttgataagtggacgatccaggtctacacccatgacattcctagaag 497
Query: 298 ttggacaaaacagcaccacggacagatccgagactaacatcaacaactgttccttccttt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttggacaaaacagcaccacggacagatccgagactaacatcaacaactgttccttccttt 557
Query: 358 taaattcatctactaatcaatccttcttagaaaccagtatgcagacattttcaggtccat 417
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 558 taaattcatctactaattgatccttcttagaaaccagtatgcagacattttcaggcccat 617
Query: 418 tgaaccatattatttttctagtatcaagatgttaagaacagcaaatccgcaaatctatag 477
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 618 tgaaccatattatttttctagtatcaagatgttaagaacagcaaatctgtaagtctatag 677
Query: 478 tattcagagactttggaggtcttgtggctttggaggtcttgtagagacaaagaagtgtgc 537
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 678 tattcagaggctttggaggtcttatggctttggaggtcttgtagagacaaagaagtgtgc 737
Query: 538 tatctct-tttttttcctctctttcctccctcccttcctccttctttcccttcctccttc 596
||||||| ||||||||| |||| |||||||||||||||||| ||| ||||||||||||||
Sbjct: 738 tatctctctttttttcc-ctctctcctccctcccttcctccctctctcccttcctccttc 796
Query: 597 cctttcttccctcctaacctaggctgcaatg 627
|||||||||| ||||||||||||||||||||
Sbjct: 797 cctttcttccttcctaacctaggctgcaatg 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1029
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1019
Effective search space: 628723
Effective search space used: 628723
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_n24.g1 MSMg01no080_n24.g1 CHROMAT_FILE:
MSMg01no080_n24.g1 PHD_FILE: MSMg01no080_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:54 2005
(462 letters)
>mm_chr18_71133492_71134353
Length = 862
Score = 833 bits (431), Expect = 0.0
Identities = 452/459 (98%)
Strand = Plus / Minus
Query: 4 tctatgagctcatgagaacattcttattcaaactaccacacacattaagcatatatgaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tctatgagctcatgagaacattcttattcaaactaccacacacattaagcatatatgaaa 517
Query: 64 tgaacagagtgatatgagtgtgcagagacatgagcaggcagaagacaacttcattgatca 123
||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 516 tgaacggagtgatatgagtctgcagagacatgagcaggtagaagacaacttcattgatca 457
Query: 124 ttgatgaaggtgaaagcaaaaagcaaataacacagttttcatggaaatgggaaaaataca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttgatgaaggtgaaagcaaaaagcaaataacacagttttcatggaaatgggaaaaataca 397
Query: 184 aaatttagaaagattgttaagttttgaattattataaattataacaatgaagaaggggga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaatttagaaagattgttaagttttgaattattataaattataacaatgaagaaggggga 337
Query: 244 aggactatagctctacaaaattgctcaccaaagctacagttctcttttgctgtattttat 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 336 aggactatagctctacaaaattgctcaccaaagctacagttctcatttgctgtattttat 277
Query: 304 tgttagttagacaatcaagaatttagacgttttacatttttcccacattttaatgtctca 363
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgttggttagacaatcaagaatttagacgttttacatttttcccacattttaatgtctca 217
Query: 364 gacactgaggtacagtctctaatctaggggatgtcacaattcatttagtatttccttttt 423
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 216 gacactgaggtacagtctctaatctaggggatgtcacaattcagttagtatttccttttt 157
Query: 424 atgacagtacacagtggcactcagcgggtttcccctcag 462
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 156 atgacagtacacagtggcactcagtgggtttcccctcag 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
