Query= MSMg01no081_g04.b1 MSMg01no081_g04.b1 CHROMAT_FILE:
MSMg01no081_g04.b1 PHD_FILE: MSMg01no081_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:34 2005
(518 letters)
>mm_chr18_42699811_42700731
Length = 921
Score = 940 bits (486), Expect = 0.0
Identities = 509/518 (98%), Gaps = 4/518 (0%)
Strand = Plus / Plus
Query: 5 gaattctttttgac-attttacttattcattaaatgtatgtctgcactatagctgtcttt 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttttgaagattttacttattcattaaatgtatgtctgcactatagctgtcttt 263
Query: 64 agacacatcagaagaaggcatcggatcccattgcatatggttttgagtctccatgtggtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agacacatcagaagaaggcatcggatcccattgcatatggttttgagtctccatgtggtt 323
Query: 124 gctgggaattgaagttaggacctctggaagggcagtcattgctcttagcctctgagccat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctgggaattgaagttaggacctctggaagggcagtcattgctcttagcctctgagccat 383
Query: 184 ctctcctgtccttcttatgatttttatctttaggtttttcttcatcattgaccgtctaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctcctgtccttcttatgatttttatctttaggtttttcttcatcattgaccgtctaag 443
Query: 244 ttatgtagtgatttttttttt---ccttaaggagaggtatgggttgaaaatggaagaggg 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttatgtagtgatttttttttttttccttaaggagaggtatgggttgaaaatggaagaggg 503
Query: 301 ctgaagatgccttcccaatctgatatcctcagcagggcagatgtaaaaagcaaagcaatg 360
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 504 ctgaagatgccttcccaatctgatattctcagcggggcagatgtaaaaagcaaagcaatg 563
Query: 361 agtgaggagtgtcggccttctgggcctgtgacttccacatcagcagtctaacaaatctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtgaggagtgtcggccttctgggcctgtgacttccacatcagcagtctaacaaatctgt 623
Query: 421 taaaccagtgattctcaacctgcggggttacatatcagatatccttcatctcagagattc 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaaccagtgattctcaacctgtggggttacatatcagatatccttcatctcagagattc 683
Query: 481 acattatgatgtataactagcaaaattacagatatgag 518
||||||||||||||||||||||||||||||| ||||||
Sbjct: 684 acattatgatgtataactagcaaaattacaggtatgag 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 921
Length adjustment: 10
Effective length of query: 508
Effective length of database: 911
Effective search space: 462788
Effective search space used: 462788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_g04.g1 MSMg01no081_g04.g1 CHROMAT_FILE:
MSMg01no081_g04.g1 PHD_FILE: MSMg01no081_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:34 2005
(633 letters)
>mm_chr18_42775855_42776890
Length = 1036
Score = 886 bits (458), Expect = 0.0
Identities = 480/489 (98%), Gaps = 3/489 (0%)
Strand = Plus / Minus
Query: 147 ggtcccaaccctgaagtcgtttacatacaggtaatatcatatacatactggtaatatatg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ggtcccaaccctgaagtcgtttacatacaggtaatatcatatacatactggtaatatatg 977
Query: 207 ctgatatcatatatataatatcagcaattaaagacaaacagatcatgaatttgagagagc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 ctgatatcatatatataatatcagcaattaaagacaaacagatcatgaatttgagagagc 917
Query: 267 acaagaggacatatggaggggctggcaggaggaaaaggaatggggatagcaattatattt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 acaagaggacatatggaggggctggcaggaggaaaaggaatggggatagcaattatattt 857
Query: 327 tagcctcaaaaataataaaaatattaaataattgtaaaaagattataccaatgtcagaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tagcctcaaaaataataaaaatattaaataattgtaaaaagattataccaatgtcagaag 797
Query: 387 tattaaaaatgtgtgcatacctcagacacacatgtgcacgcacatacacacacctctaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tattaaaaatgtgtgcatacctcagacacacatgtgcacgcacatacacacacctctaaa 737
Query: 447 t---agaagatatagacaaagcagaagagggaagccaggtgctagctgggggctttgagc 503
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tagaagaagatatagacaaagcagaagagggaagccaggtgctagctgggggctttgagc 677
Query: 504 ctggctgtcacagaggccaatgacacaaacccagtccacttcccagttttattcanagac 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 676 ctggctgtcacagaggccaatgacacaaacccagtccacttcccagttttattcaaagac 617
Query: 564 agtttgcttaaatttgtatgacattttctatcgcatgaatttttgtatagtactgataca 623
|||||||||||| |||||||| |||||||||| |||||||||||||||||| ||||| ||
Sbjct: 616 agtttgcttaaagttgtatgaaattttctatcccatgaatttttgtatagtgctgattca 557
Query: 624 aacccatat 632
|||||||||
Sbjct: 556 aacccatat 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1036
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1026
Effective search space: 639198
Effective search space used: 639198
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
