BAC Information

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BAC

Clone NameMSMg01-082B13
Chromosome18 (Build37)
Map Location 16,698,189 - 16,698,370
singlet/doubletsinglet
Overlap genenone
Upstream geneChst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082B13.T7 (MSMg01no082_b13.b1)MSMg01-082B13.TJ (MSMg01no082_b13.g1)
ACCAG302545AG302546
length713714
length of high quality
(start - end)
195 (62 - 256)182 (440 - 621)
definitionCHROMAT_FILE: MSMg01no082_b13.b1 PHD_FILE: MSMg01no082_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:29 2005CHROMAT_FILE: MSMg01no082_b13.g1 PHD_FILE: MSMg01no082_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCAAGA
AGTTTTCACCAACAACCTAAAGATCCCAATTTAAAATGGGGTATAGTACT
AAAAAGAATTCTCACTAGAGGAGTCTCAGATAGCAAATAAGGACTTAAAT
GTTGAAAGTTCTTACTCACCAGGGAAAGGTAAATCAAAGCAACTCTGAGG
TTCTATCTTACACCCATCAGAATGGCTAAGATAAAAACCTGCCTAGAGGA
GAAGGAGAGGTGGCAAGAAGATACGATTGTACCATATGAAATAAAGTTGA
CAGATTCTGCTTATTTTTTGGTTTCTTTTCTACAATGAAATCTTGCCTTC
TGATTTATTCATGACATATGACCCTCTTTCCAAAAAGAAGTTGAAAGGCC
GTTCCCCCCCCCTTATTGAACACATATGCTTAGAGGCTTTTTAGCTTTAA
TGGAAGCTTTTGGGACATCAAAGTTGTTCAATTTCGCTTAGTTGACTTTT
GCTTTTCCCCCATGTTAAGAGTGAGACTTTATAGTACATTTTTCTTGTCT
AACACCCCCTAATACAGAGAATAACCCTAATATTTATATAACTAGAAGAG
AAATTACGACGAGGAGAATTACGTCTACCTAGATAAAAACCTGTGGATCG
TTTCAGCTAGCGATATAGCTCAAGTCTAACAGTCTTGCGCTTCTTATGGA
GAGAATGGAGACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGAAGGTACTCACAGCTGCTCTCATTTCAAG
ATGATAATGGCTCTGTCAAGTCCTGAGGACAGATTTCCACAGCACGGAGC
TGTCAGCCTTCTGTCATTGCTAGTAGACAAACATTTGTGAAGACAATGCT
GTGATCTAGCCTATAGCTGTTGTGATCACAGGGAACAGAGAGGACTAGGG
CATAGTGACAGGTGTTGGACTGAAGAGAGGATCACCCAGAATCATCATGA
TTCCTTAGAATCTCAGTGTTGTCATCTGTGAAAAAAGTCACACATGTGTT
ACATGTGTTCTTTGACCACTTATATATTTTTCTTTTGTTATTTGATTTAA
ACATTTGAGCATTAGTATCAGTAGTTTTACTAGATTGTCTCTGAAAATCC
TTAGCCCTTGACATCACTGTATTGGAAATAGTGTCTGAAATCTTGGAAGA
ACTAAAAATATTAAGAAAAGTAAATGAAATTTGTTCCACAATATTACTTA
TAGATAATTAAGCTACTATCCAAAGTTAGCTAAGTTGATACAAGACATCA
GGATCTGTTGGGCACTGGGCAAGGAGACTGTAGAAAGAGAAAACAAGATA
GAGAACTCTGGCCTTATTTGTCACAGTTCTATGATTTACAGAAGAAAACC
ATGATAACGATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_b13.g1 MSMg01no082_b13.g1 CHROMAT_FILE:
MSMg01no082_b13.g1 PHD_FILE: MSMg01no082_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:29 2005
         (182 letters)



>mm_chr18_16697989_16698570
          Length = 582

 Score =  337 bits (174), Expect = 3e-97
 Identities = 180/182 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaaaatccttagcccttgacatcactgtattggaaatagtgtctgaaatcttggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctgaaaatccttagcccttgacatcactgtattggaaatagtgtctgaaatcttggaag 323

                                                                       
Query: 61  aactaaaaatattaagaaaagtaaatgaaatttgttccacaatattacttatagataatt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 aactaaaaatattaagaaaagtcaatgaaatttgttccacaatattacttatagataatt 263

                                                                       
Query: 121 aagctactatccaaagttagctaagttgatacaagacatcaggatctgttgggcactggg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagctactattcaaagttagctaagttgatacaagacatcaggatctgttgggcactggg 203

             
Query: 181 ca 182
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)