XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTGTTTTTCATAGCATTTATACCTCCATATAAATATACCACATTTTCTG
TACCCATTGTTCTGTTGAAGGATGTCTGGGTTCTTTCCAGCTTCTGGCTA
TTATAAATACGACTGCTATGAACATAGTGGAGCATGTGTCCTTATTATAT
CTTGGAGCATTTTTGGTATATGCCCAGGACTAGTATGGCTGGGTCCTCAG
GTAATACAATGTCCAATTTTCTGAGGAACCCAAACTGATTTTCAGAGTGG
TTTTACCAGCTTGCATTCCCACCAGCAATGGAGAAGTGTTCCTCTTCCTC
CACATCCTCGCCAGTATCTGCTGTCACCTGAATTTTTCATCTTAGCCATT
CTGATTGGTGTGAGGTGGAATCTCAGGGTTGTTTTCATTTGCATTTCCCT
GATGATTTAGGATGTTGAACATTTTTTTCAGGTGTTCTCTGCCATTCGTT
ATTCCTGGGGTGAGAAATCTCCGTTCAGTTCTGAGCCCCATTTTTTAATG
GGGTTATTTGAATTTATGGAGTCTACCTTCTTGAGTTCTTTATATATATT
GGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAAT
CTGTTGGTGGTCTTTTTGCCTTATTGATGGTGTCTTTTGCCTTGCAGAAG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTACGAAGGTTAGCAAGTGTGCTGCACAGTA
AATTTCCAGTGGATAACTATTAGCCCACATGAGAGGCAAATTTTTAAAGA
ACTGAATCTTTACTAACATTCCTGAAAATGTTCTTTGATTACAGATTATG
AAATAAGAACTGGCTGATGGTTGTACACAATGAAAGAAGGGTAGAGATAA
ATGAAAAGCAAAAGAGAAGTTAGAAAAATCTTTATGAGAATATAAGCTAA
AAAGACCTTGAGGTAGAGCTTGTCAAATGTGGGTTGACATAAAAACATTT
GTAGGTAAGGAGGCCATGAAGAAAGAGTGATCCGTGGATTGCCAAATTGA
GTAAAACAAAATTCTTCCTGGGCAGAGAAGGTAAGCCTTACATGTACTAT
AGCAACTGGATAGAATCACAAGATGTAACTGCTTCAGCATCACACCAGCA
ATTCATGTCCCAAACTGGATTTTGAAATACACACATGGGAGGATATTTAT
ACAAGTAATTATGGTACAATTATGGTAGCTCAAAGTAGACAATTACTCAG
TGTTGGTGTGAGTTTGGTGATATATCTGCATAGAATCATACATGCAACAA
CTCAAAAATACATATTATTTTCAGATGTTCGTAGAATATTATTCCAAATG
AGGCCA

Query= MSMg01no082_d11.g1 MSMg01no082_d11.g1 CHROMAT_FILE:
MSMg01no082_d11.g1 PHD_FILE: MSMg01no082_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:38 2005
         (613 letters)



>mm_chr18_49085949_49086960
          Length = 1012

 Score = 1089 bits (563), Expect = 0.0
 Identities = 600/623 (96%), Gaps = 18/623 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaggttagcaagtgtgctgcacagtaaatttccagtggataactattagcccacatgaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaggttagcaagtgtgctgcacagtaaatttccagtggataactattagcccacatgaga 264

                                                                       
Query: 65  ggcaaatttttaaagaactgaatctttactaacattcctgaaaatgttctttgattacag 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcaaatttttaaagaactgaacctttactaacattcctgaaaatgttctttgattacag 324

                                                                       
Query: 125 attatgaaataagaactggctgatggttgtacacaatgaaagaagggtagagataaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attatgaaataagaactggctgatggttgtacacaatgaaagaagggtagagataaatga 384

                                                                       
Query: 185 aaagcaaaagagaagttagaaaaatctttatgagaatataagctaaaaagaccttgaggt 244
           |||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaa-aaaaagagaagttataaaaatctttatgagaatataagctaaaaagaccttgaggt 443

                                                                       
Query: 245 agagcttgtcaaatgtgggttgacataaaaacatttgtaggtaaggaggccatgaagaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagcttgtcaaatgtgggttgacataaaaacatttgtaggtaaggaggccatgaagaaa 503

                                                                       
Query: 305 gagtgatccgtggattgccaaattgagtaaaacaaaattcttcctgggcagagaaggtaa 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagtgatccgtggattgccaagttgagtaaaacaaaattcttcctgggcagagaaggtaa 563

                                                                       
Query: 365 gccttacatgtactatagcaactggatagaatcacaagatgtaactgcttcagcatcaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gccttacatgtactatagcaactggatagaatcacaagatgtaactgcttcagcatcaca 623

                                                                       
Query: 425 ccagcaattcatgtcccaaactggattttgaaatacacacatgggaggatatttatacaa 484
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 ccagcaattcatgtcccaaactggattttgaaatacaaacatgggaggatatttatacaa 683

                                                                       
Query: 485 gtaattatggtacaattatggtagctcaaagtagacaattactcagtgttggtgtgagtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtaattatggtacaattatggtagctcaaagtagacaattactcagtgttggtgtgagtt 743

                                                                       
Query: 545 tggtgatatatctgcata-----------------gaatcatacatgcaacaactcaaaa 587
           ||||||||||||||||||                 |||||||||||||||||||||||||
Sbjct: 744 tggtgatatatctgcataatggtcgaataactatagaatcatacatgcaacaactcaaaa 803

                                  
Query: 588 atacatattattttcagatgttc 610
           |||||||||||||||||||||||
Sbjct: 804 atacatattattttcagatgttc 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space:   604206
Effective search space used:   604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)