Query= MSMg01no082_m12.b1 MSMg01no082_m12.b1 CHROMAT_FILE:
MSMg01no082_m12.b1 PHD_FILE: MSMg01no082_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:20 2005
(183 letters)
>mm_chr18_74787107_74787690
Length = 584
Score = 308 bits (159), Expect = 2e-88
Identities = 178/185 (96%), Gaps = 3/185 (1%)
Strand = Plus / Plus
Query: 1 ccacccagtctgcttcgctcgaatatagaggctcaggctgagtaagaggctctgtgtcaa 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacccagtctgcttcgctcgaatacagaggctcaggctgagtaagaggctctgtgtcaa 260
Query: 61 acaatagggtgagaaaagaaatgaaggaagtcacctcatgtgaccagggcctctgtggat 120
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactaggg-gagagaagaaatgaaggaagtcacctcatgtgaccagggcctctgtggat 319
Query: 121 gcacacacctgcacaggtacatgtatgt--gtgtgtgtgtacaccgtatatatatgcata 178
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 320 gcacacacctgcacaggtacatgtatgtctgtgtgtgtgtacaccgtatgtatatgcata 379
Query: 179 caaca 183
|||||
Sbjct: 380 caaca 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 584
Length adjustment: 8
Effective length of query: 175
Effective length of database: 576
Effective search space: 100800
Effective search space used: 100800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no082_m12.g1 MSMg01no082_m12.g1 CHROMAT_FILE:
MSMg01no082_m12.g1 PHD_FILE: MSMg01no082_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:20 2005
(244 letters)
>mm_chr18_74938719_74939362
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Minus
Query: 1 actaccacgacagtgacctccaaaggtcaggagcctagccagtcctggtcttcagtctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actaccacgacagtgacctccaaaggtcaggagcctagccagtcctggtcttcagtctct 385
Query: 61 gcgttagaaactgcacagaaatcgtggtcgcccgtgccttccacggtgttcctccttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcgttagaaactgcacagaaatcgtggtcgcccgtgccttccacggtgttcctccttaat 325
Query: 121 gcaaacagtgtccaccccgatcccagccctgggagaggaacgacctgcaccgacacctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcaaacagtgtccaccccgatcccagccctgggagaggaacgacctgcaccgacacctct 265
Query: 181 gcttgctcgcagagcccagataccgaatcacgaccgggggagcaccaagggcgctgggct 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 gcttgctcgcagagcccagataccgaagcacgaccgggggagcaccaagggcgctgggct 205
Query: 241 cacc 244
||||
Sbjct: 204 cacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
