BAC Information

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BAC

Clone NameMSMg01-083A07
Chromosome18 (Build37)
Map Location 30,223,406 - 30,223,898
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040930, 4930578E11Rik, LOC666073
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083A07.T7 (MSMg01no083_a07.b1)MSMg01-083A07.TJ (MSMg01no083_a07.g1)
ACCAG303250AG303251
length693701
length of high quality
(start - end)		497 (42 - 538)---
definitionCHROMAT_FILE: MSMg01no083_a07.b1 PHD_FILE: MSMg01no083_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:38 2005CHROMAT_FILE: MSMg01no083_a07.g1 PHD_FILE: MSMg01no083_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCAGACCACAATTTCTCTACTTAGAGTTGTAAAGCTATTTAAAAATCT
TTAAATAGTTATATGTGCCTATATGAGTGTGCTCATATACTCTCAGAGAT
ATACACTAAACTCACATCCATAAATTCAAATATATACCCTCATATATGCA
CACCTACATCTTCTTATGAATTCACATACTGTCACACACATTTATACATG
TATACACATATATCCCTATGTACTTAACAGTTACACATATTCACACATTC
ACACACTTAGACACTACCTCACAAGTCATATATGTCTAGCTTTGCTTTTC
TCAGATAATATCTGTAAAATCTGAACTAGCCGTACATTTACCTTCTTTAT
TTTACTATGCCAGGACTGTTGCTGCATCTGTACCAATAGGCACAGGAAAA
TGTGAAGAACATTCCCAGTTCACTGATGAAAATTTCCATGGTGTTTTTCT
GACACCATGGAGCCTTTGAACAGTACCTCCATTCACAGTAAGAAACTATG
GGAGATCTCTGATGAAAAATCTTTTTTTTAATTAGGTATTTTCCACATTT
ACATTTCCAATGCTATTCCAAACGTCCCCCATACCCCATCTAATCTCCTA
TCCACCAACTCTCATTTTTTTGACCTGGCATTCCCCTGTACTT

NCCCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAACAACATT
TTAGGTGGACACTAATAGNAAATGCCCCCCGTCGNGNAAATTTCCAAAAA
GGTTAACTTAAAANAAGGTAAAAAGNCCACCACCGGCCTTTTGGAAATGG
AACCCCCCTTTTAAATTTTCCTTTGGGCCAAAACACCTCTTTTTGGGCTT
TTCCCTTTTGGCACTTGGCCAAAATCCTCCCCCGTTTTTTAAATAGGAAA
AAACCCCCCCCCCCCCCATTATTAAAAAACCCCCCTCTTAATTAAAAAAT
AACCCCCTCTCTCCGTATTCGAGAAAAAAACAGTTCATTCTCTTCAGGGA
CACCCCCCACGGTGGGGGGCAAAGAAAACCCCTCCTCCAAAAATAATTGT
GAGGACAAAGCTCTTTCCGCCATCACACACCCTTTCACTTCCACAACAAC
AACACTCCCCCCCCATCCAACAAATAACACTTCCCCCCCCCTCCCGGGCG
TTGCCCCTTTACTCCCCCCTCTCTCCTCAACCAAGAGTCGGGCACACATC
CACCTTTATCGGCCCCCCTCCTCCCACCCCATCTAAATCACTACCCTCCT
CCTTACCGTCGTTTATCCACACCCTCCTACCAACCATACCATGTTCCACT
CCCACTCATCCTCATCCCCAATACCACTTATACGCAGACTCTTGCCTTGT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_a07.b1 MSMg01no083_a07.b1 CHROMAT_FILE:
MSMg01no083_a07.b1 PHD_FILE: MSMg01no083_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:38 2005
         (497 letters)



>mm_chr18_30223202_30224098
          Length = 897

 Score =  946 bits (489), Expect = 0.0
 Identities = 492/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcagaccacaatttctctacttagagttgtaaagctatttaaaaatctttaaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcagaccataatttctctacttagagttgtaaagctatttaaaaatctttaaa 264

                                                                       
Query: 65  tagttatatgtgcctatatgagtgtgctcatatactctcagagatatacactaaactcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagttatatgtgcctatatgagtgtgctcatatactctcagagatatacactaaactcac 324

                                                                       
Query: 125 atccataaattcaaatatataccctcatatatgcacacctacatcttcttatgaattcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atccataaattcaaatatataccctcatatatgcacacctacatcttcttatgaattcac 384

                                                                       
Query: 185 atactgtcacacacatttatacatgtatacacatatatccctatgtacttaacagttaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atactgtcacacacatttatacatgtatacacatatatccctatgtacttaacagttaca 444

                                                                       
Query: 245 catattcacacattcacacacttagacactacctcacaagtcatatatgtctagctttgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catattcacacattcacacacttagacactacctcacaagtcatatatgtctagctttgc 504

                                                                       
Query: 305 ttttctcagataatatctgtaaaatctgaactagccgtacatttaccttctttattttac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttctcagataatatctgtaaaatctgaactagccgtacatttaccttctttattttac 564

                                                                       
Query: 365 tatgccaggactgttgctgcatctgtaccaataggcacaggaaaatgtgaagaacattcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgccaggactgttgctgcatctgtaccaataggcacaggaaaatgtgaagaacattcc 624

                                                                       
Query: 425 cagttcactgatgaaaatttccatggtgtttttctgacaccatggagcctttgaacagta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagttcactgatgaaaatttccatggtgtttttctgacaccatggagcctttgaacagta 684

                        
Query: 485 cctccattcacag 497
           |||||||||||||
Sbjct: 685 cctccattcacag 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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