BAC Information

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BAC

Clone NameMSMg01-083B24
Chromosome18 (Build37)
Map Location 68,608,106 - 68,608,334
singlet/doubletsinglet
Overlap genenone
Upstream geneAfg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083B24.T7 (MSMg01no083_b24.b1)MSMg01-083B24.TJ (MSMg01no083_b24.g1)
ACCAG303331AG303332
length706708
length of high quality
(start - end)
229 (129 - 357)---
definitionCHROMAT_FILE: MSMg01no083_b24.b1 PHD_FILE: MSMg01no083_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:46 2005CHROMAT_FILE: MSMg01no083_b24.g1 PHD_FILE: MSMg01no083_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCG
GAATTCATTCTGTTCAAAGGAAATAAATCATGAAGTTGGCAATCAGATGG
ACTGAACTAGAAAATGTTACACCGGGACAACCTGGACCCAGGAAGGTGAC
CACAACATTCTCTCTTATCTGTGGATCTTAAGTCTAAATCCTTAGGTTTG
AGTTCAGAATCTAAAGTAAACGTAGAAGTCAGGAAAGGAGAAGGGGGCTG
TGGATTGAGAGCTCTCTAGAGAAAGGGATAGTAAGACAGAATTGATATGA
AGGGGAATGGGAAGAAATGAGGAGACTTTAGCCAGGCAGTGGTGAAGATG
GATAATAAAGAGGGAGACCGGAGAGGAGAAATGAATCATATTAAAATGTT
TGAAAAAGTTCTAGGGAAGCATTTTTTTATGAAATATATATGAAATACAC
ATAGGTATATAACACATATGAAATACATATAAAGAACACATATGTGTATC
TATTTGTCTGTCCATCCATCCATCCATCCATCCATCCTTCCATCCATCCA
TCCATTCCATCTATCCACCTATCTAGCTAACTATAAATCCTTACCTATCA
ACCTATCTATTTATTTAATTATACTTTCATTTTACTTTTCCACGTAAATT
AATTAATTTAATTCTTTTTTTTTCTTACTACATATTTAAATATCTATGAT
AATACG
NTTTTTCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGTCTGCGCACTTCCATGCTACGTGTCCAGGAGA
CCCTGTGAGCTATGTTCCTTTCTTCTCCCCCATATGTATGGATTACGTCA
TGAAGACCTGTAGTAATAACCTGTTCAGATTCAAGAACCTCATTCCTAGC
CTGATTAGAGGGAGCCTGAACAGTGGAGGCCACAGATAATCACGGAACTA
AATATGGAACTCAAGTACCAAAAGCCAGTATGAAACGTGTTGCTTTTCTT
CTTATAGCAATGACGTTTTGTATTCATTTGGTCTTTGAGGACAAATCTAG
GTAATTCAAGGATATATGTTCTAGTGGCGAGCCCTCTAGATGTAGACTCG
CTGTAAAGACATGTAAGTTTTATGACAGCTCAGACTTCTTTCGTATTTAT
TTTTATTACCTTGGTACCCAGAATAGCACCCGGCACAAAGCAAAGCGTCC
AGTAAAGGTATATGGTAACTAAATAAAGAGTTTACTGTTTATTATTGTTA
TTGATCACCATGTTTCATCATTTGTTTGGTGGACCTTACACTAGCTTCTA
CTTGTAATAATGGAGGCATATTAATATGAAATGTTCTATCCTCCGGTTAA
AAGGTGTTATTCTATTGAGCTTATGAATTTATGTGCTAATGCACTCTAAA
CTACAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_b24.b1 MSMg01no083_b24.b1 CHROMAT_FILE:
MSMg01no083_b24.b1 PHD_FILE: MSMg01no083_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:46 2005
         (229 letters)



>mm_chr18_68607906_68608534
          Length = 629

 Score =  422 bits (218), Expect = e-122
 Identities = 227/230 (98%), Gaps = 2/230 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctggacccaggaaggtgaccacaacattctctcttatctgtggatcttaagtctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aacctggacccaggaaggtgaccacaacattctctcttatctgtggatcctaagtctaaa 260

                                                                       
Query: 61  tccttaggtttgagttcagaatctaaagtaaacgtagaagtcaggaaaggagaagggggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttaggtttgagttcagaatctaaagtaaacgtagaagtcaggaaaggagaagggggc 320

                                                                       
Query: 121 tgtggattgagagctctctagagaaagggatagtaagacagaattgatatgaaggggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggattgagagctctctagagaaagggatagtaagacagaattgatatgaaggggaat 380

                                                             
Query: 181 gggaagaaatgaggagactttagccaggcagtg-gtgaagatggataata 229
           ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 381 gggaagaaatgaggagactttagccaggcagtgcg-gaagatggataata 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)