BAC Information

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BAC

Clone NameMSMg01-085H23
Chromosome18 (Build37)
Map Location 38,041,430 - 38,041,628
singlet/doubletsinglet
Overlap geneDiap1
Upstream geneEG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5
Downstream geneHdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085H23.T7 (MSMg01no085_h23.b1)MSMg01-085H23.TJ (MSMg01no085_h23.g1)
ACCAG305057AG305058
length1,2081,114
length of high quality
(start - end)		---201 (59 - 259)
definitionCHROMAT_FILE: MSMg01no085_h23.b1 PHD_FILE: MSMg01no085_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:20 2005CHROMAT_FILE: MSMg01no085_h23.g1 PHD_FILE: MSMg01no085_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGTCCGC
GAGGCACAGGCCCATAAAAGACTGCTGGGGACGGAGTGTTGTTGGGAGAA
GGCCTTTGAAAAGGGACCGCGAACAATCTTTTATTTATTTATTTTCCTCT
AGGAGCCTTCACCTTTCATTAAAACAGCCTCCGGATGTAGGTGCAATCAA
ACATTCATTAGACAAGCAAGGTACATTTAAGAATAAGCTATCAACGCCCA
GCGCGCGTACACATCCACACATGCATTAATAATCAATTCTGCGAAATGAA
ACCAGTCCTTCAGTGTGAGATTAATTTATCGTGTTCCTCCGCATTCGGTT
CCCCAGGTCCTGCGATCTCGTCCCTCCCACTAATCCCGTCACCTGTGTTT
TTTTTTTTTTGCCCTATTTTCTTGCCTTTGATTTCGGTACTAAAATGCCC
CCCTCTTTGTTTTCGACCTCTTTTCCTCTTTCACCTTTTCTTTTATAATT
CTTTTCCTATCTTTTTTTTCTTTTTTTTTCATTATTATTTTTCATTTTTT
TTTCTTCTTCTTTTTCATTATTTATTTTTTTTTCCTTTTTTTTATTTTTT
TTTTTTTTCTTTTTTCTTTTCTATTTCTTTTTCTTATCTTTTTTCTTTTC
TTTTTTTTTTTTTCTTATTTCTTTTCTTTTTTTTTCTTTTTTTTTTCTTT
TACTCTTCTTTAATTTTTTTTTTCTCTATATATTTTTTTTATCTTTTTTT
TTATTTTTTATTTATTTTTTTTATCTTAATTTTCTCTCTGTCTATTTTTT
TTTTATTTTTTTTTATTTTTTTTTTTTTTTTTCTTCTTTCTATTATTTTT
TTTTTCTTTCTTTTTCTTTTTTTTTTTTTATTTTTATTATTTCTTTTTTT
TTTCTCTCTTTTTATTTTATTTTTTTTATTCTCCCTTATTTTTTTTTATT
TTTTATCTTTTTTTTTATTTATTTTTTTTTTCTCATCTTTCTTTTTTATC
TTTTCTTTTTTTATTTCTTTTCTATTATATTTCCTTTTTTCTTTTCTTTC
TTTTCCTATTTTTTATTATTTTTATTTTTTTCTTTTTTTCTTTTTTTGTA
TTACTTTATCTTTTCTTCTTCTCTCTTCTCTTTTTTATTTCTTTATTATT
CTTTTTTTTCGTCTTTTTTCTTTTATTTTTTTTCTTATTTCCCTTATTTT
ATTATTAA

GCCCCTAAAGACCCCCCANNGAGGNNNGAGGGAGNAAAGAACCTCTTAAA
AGCCTCCCCCAGGAAGAACAAGAANCCANATTTGTACTTGCTTATAATTG
CATTAAAAAAAAAAACCCTGAAACAGAATTAAAAATCAAAGCATGATTAT
TTCCTGAGGGTGAGAAAGGGAGACTGGAGTAAAGGCTGACTGGGAATGAG
GTTGCTTTACAGCGTCTTCAGTACTGAAATACCTGTGCTACCCCTGCTGA
AGAACAAGCTTTTTTTCAAACAAAAGCCAGAGCAAACATCTCTTGGCAGA
AACACTCTCCCAACTTCATGGCCAGCAACAGTTTTTTTTTTGTTCCAGAC
NCCAGAACCCCCAAAGAGCAGAAGGAAAACCCCCCCCGAGATCTGCGAGT
TTTCCCAAGGTAGCACCTTTGGCTCCAGCAGGTAGCATCAGTGCTCCATT
ATGTAGCACAGCCTATTTCTTCTACCATGCTTCCTGGAGACCTTGCTCTT
TCTCATGACCTCTTCTCTTGCTCTCCACAGCTAGAGTGTACCCCATCTTG
CTCAGGAGTTATGTATGCAGGGTCCCTGTACTCTCCCCTCCCTGATGTCC
TCCTGCTTTGTCTGTCACATGTGACGACTCTCATCCTCTCTAACCCACTC
TATCTCTACTCTCTAGTTATCCAGCCTCTTCTCCGACCCCAGGTAACATT
CCAAACACCCTTTTTTTTTTTTTTTTGTCATCCTTCCATTATAATTTCTC
CGAAAATTCTTTTTCTCTTCCTTCTATTCGTCTATCTATATGCTCTTCTT
CAACTTTTTTTTTTTTTTATATTCTCCTACCATCCTCCTCTTTTCCTAAT
TTAATTTCTCTTCCTACTGTCCCCTATTTTATCCTTTTTTTCACCGTTTC
TCTCTTTTCCCTTAATTCTCCTTCCTTGCCTCTTGTTTTTTTCTTCTTCA
ACTCTTCGAAAACTCCTCCCTCCCATTCTTTTCTGTTTCCTTTTCCCTCT
CTATGTTTTTTACTCTTCTTTCTTTCTTTGTTCTCTTCTTTTATTTTCCT
GTTCTTCTCTTCCTCCCACTCTTGTTTTGTTTCTCTCCTTTACTTGTTCT
CCTTTTCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_h23.g1 MSMg01no085_h23.g1 CHROMAT_FILE:
MSMg01no085_h23.g1 PHD_FILE: MSMg01no085_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:21 2005
         (201 letters)



>mm_chr18_38041229_38041828
          Length = 600

 Score =  344 bits (178), Expect = 2e-99
 Identities = 194/200 (97%), Gaps = 1/200 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   caggaagaacaagaanccanatttgtacttgcttataattgcattaaaaaaaaaaaccct 61
           |||||||||||||||  || ||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 202 caggaagaacaagaattcatatttgtacttgcttataattgcatt-aaaaaaaaacccct 260

                                                                       
Query: 62  gaaacagaattaaaaatcaaagcatgattatttcctgagggtgagaaagggagactggag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gaaacagaattaaaaatcaaagcatgattatttcctgagggtgagaaagggagactggaa 320

                                                                       
Query: 122 taaaggctgactgggaatgaggttgctttacagcgtcttcagtactgaaatacctgtgct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaggctgactgggaatgaggttgctttacagcgtcttcagtactgaaatacctgtgct 380

                               
Query: 182 acccctgctgaagaacaagc 201
           ||||||||||||||||||||
Sbjct: 381 acccctgctgaagaacaagc 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 600
Length adjustment: 8
Effective length of query: 193
Effective length of database: 592
Effective search space:   114256
Effective search space used:   114256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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