BAC Information

Click to search

BAC

Clone NameMSMg01-085N02
Chromosome18 (Build37)
Map Location 10,104,172 - 10,104,522
singlet/doubletsinglet
Overlap geneRock1
Upstream geneFzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14
Downstream geneLOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085N02.T7 (MSMg01no085_n02.b1)MSMg01-085N02.TJ (MSMg01no085_n02.g1)
ACCAG305291AG305292
length1,2241,267
length of high quality
(start - end)
367 (21 - 387)502 (81 - 582)
definitionCHROMAT_FILE: MSMg01no085_n02.b1 PHD_FILE: MSMg01no085_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:06 2005CHROMAT_FILE: MSMg01no085_n02.g1 PHD_FILE: MSMg01no085_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCGTATAGACTCATAAGGGAGAGGATCCGCGGAATTCTCTAAAAT
TCTGTTTCCTTTAGAAATTCTCTGTTCAGGGACTCTAGCTGACTAATTGA
TTTGCTCATCTCTGTGTGACTCTTCCTTAATCTTACAGCTGTGTCTGATT
CTGTCCTAAGTAAGTCATTCGCTTCTTCTAACTATTAAAAAAAAAAAAAA
AAAGAATTAAGTTTGACCAAACACGATCATGTTTCTTTTAATTAACTATA
ATTTTAAAAGAATCCTGATGAAGAACTGACCTGCTTCTGTAACTGTGTCA
GCTTCTCATTAGCAAGCTGTGAGGTCTGACTTGCTTTCCGTAAGTCTTCC
AACTGGTCCTTTAGTGTAGAAACTGGGGAGTCAAAGATTATGCAGAAATT
ACATATTTTGTTAGAAAAAACACATCTTTTTAATAATAAAATTTATTCTT
AGACCCAACAATCAGCGAAATTATATCCTTTCTCAGTCCCAAAACAAATT
CTATCATACAAGTTCTTATATTCTTAATCTATCAAAAAGTAGAGCATGGT
TTTACAGTATAAAGTAAAACAGCTTTGTCTCCAATACTAGTATTCCAAAT
TCTTTTATTGCCTTCATGGTACCCATCTATTGCTGTAACATTACAGAGCT
ACTTTTTGCATCTCCTCCCAATCTAACCTCCCTAGGTTGATTTTGATATT
CTCTTGATTTTTCTAATCCAATACAATATCTTCACTTATTTCTCCCGCCT
TATCTCCTGCATTGTTGTTTAATTTTATTGTACCATCTAATTTTTATTTT
CTATGCTCTTCTCTTTTATATCTCACCCTTAATATTTATATTATCATTCC
CATTATCTTTTTCTTTGCTTATATTAGCTCCTTTAATTATTTATTTTTCT
TATAAATCTTCTAACATTTTTCTTTTCTATTTTTCTTTCTATTTATGCAT
CTCTCTTATCTATTTTATCTCTTCTTTCCTTTTTTATTCCTTTTCCTCAT
TCTAATATTAATCCTCTTTCATTCTTAATTCTATTACTTCTTCATATCTA
AATTAACTACTTTTGCTTGCTTTCTTTCTATCATTTTATTCTTTAATTAT
GCTCATACTTCTCCTTTCTTATCCTTTCTTCATCACTTTACTAATAATTC
ATTTCATATATTCTTATCATAATCCAATATAATATACCTTTTCCATCCCT
TTCCCTTTTACTTTATTCACTTTA
TGTTTNTTTTTGATGTGAGTCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTCACCTGAGGAATACCGAATGGCTG
AGAAGCACCTGACAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAGCCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTTTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGGCATAGTACTCCTGGAGGGTCC
CACAATACCTCTCCTGGGCATATCCAGAAGATGTTCCACCTGGTAAGAAG
GACACTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGTCCCTCACCAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTACTAAAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGATTGACCTGCAGGGCCTCATCCTGAGTGA
GGTAACCCAATCACAAAAGATCTCACATGATATGTACTCACTGATATATG
GATATTACCCCATATACTTACAATATCCTTTATTCAAGACATAAAGCTCA
TGAAACTCATTAATATCGCCCTACCAAGTTTTTTTTTATTTTTTTTCTTT
TCTTTTTCATACCTACTAACTCTCTTTCATTTCCTAATCTCTACTCTTAT
CCTTTCTTACCTCATTCTCTTTCTACTCTTTTTCTCTCCCCCCTTTAATT
CTCTATTCTTTATCCCTGTTTCTTGTTACTTTCTCTTAACCTTATCACAA
TTATCTTTTTACTCTTTTTTACTCTTTTTCTTCATCTTTTTGCTTACTCT
AATTCTCTTTCTTTTAACTCCTCCTTCTTTCTTTCTATCTCCTTCTTTCT
TTCTTTTTCTCTTTTCCTTTTCTCCTTCTCTCTCTATCTATTTTCCTTCC
TCACTTTTTCTTTATATCTTTATCTCCCCCCCCCCTTATTTTATGATTTA
TTGTATTATTTCTTCTCCATCTCTACTCCTTTTTTCTTTTACTTTTCTCC
TCCTTCTTTCTTTTTCCACCTCTCTTCTTTNTCCCATTCCTTTCTCTCTT
CATTCTATGTTCTCTTACCACTCTCTCTATCTTCGTATTCTTACTATATC
TTCTCTCGCACATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_n02.b1 MSMg01no085_n02.b1 CHROMAT_FILE:
MSMg01no085_n02.b1 PHD_FILE: MSMg01no085_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:06 2005
         (367 letters)



>mm_chr18_10103957_10104724
          Length = 768

 Score =  623 bits (322), Expect = 0.0
 Identities = 345/354 (97%), Gaps = 5/354 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  ggaattctctaaaattctgtttccttta--gaaattctctgttcagggactctagctgac 73
           ||||||||||||||||||||||| |||   | ||||||||||||||||||||||||||||
Sbjct: 216 ggaattctctaaaattctgtttc-tttcctgtaattctctgttcagggactctagctgac 274

                                                                       
Query: 74  taattgatttgctcatctctgtgtgactcttccttaatcttacagctgtgtctgattctg 133
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 taattgacttgctcatctctgtgtgactcttccttaatcttacagctgtgtctgattctg 334

                                                                       
Query: 134 tcctaagtaagtcattcgcttcttctaactattaaaaaaaaaaaaaaaaagaattaagtt 193
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 335 tcctaagtaagtcattcgcttcttctaactattaaaaaaaaaaaaaaa--gaattaagtt 392

                                                                       
Query: 194 tgaccaaacacgatcatgtttcttttaattaactataattttaaaagaatcctgatgaag 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgaccaaacacgatcatgtttcttttaattaactataattttaaaagaatcctgatgaag 452

                                                                       
Query: 254 aactgacctgcttctgtaactgtgtcagcttctcattagcaagctgtgaggtctgacttg 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aactgacctgcttctgtaactgtgtcagcttctcattagcaagctgtgaggtctgacttg 512

                                                                 
Query: 314 ctttccgtaagtcttccaactggtcctttagtgtagaaactggggagtcaaaga 367
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctttccgtaagtcttctaactggtcctttagtgtagaaactggggagtcaaaga 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 768
Length adjustment: 9
Effective length of query: 358
Effective length of database: 759
Effective search space:   271722
Effective search space used:   271722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)