BAC Information

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BAC

Clone NameMSMg01-087A06
Chromosome18 (Build37)
Map Location 16,965,144 - 16,965,268
singlet/doubletsinglet
Overlap geneCdh2
Upstream geneLOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneLOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087A06.T7 (MSMg01no087_a06.b1)MSMg01-087A06.TJ (MSMg01no087_a06.g1)
ACCAG306166AG306167
length707718
length of high quality
(start - end)
447 (74 - 520)125 (78 - 202)
definitionCHROMAT_FILE: MSMg01no087_a06.b1 PHD_FILE: MSMg01no087_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:58 2005CHROMAT_FILE: MSMg01no087_a06.g1 PHD_FILE: MSMg01no087_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATCAGACCTCACAAAGAAGAACAAATACCAATATTCCTC
AAATTATTTCACAAAATAGAAACACAAGGAATACCACCCAATTTGTTCTA
TGAAGCCACAGTTATGGTGATTCTTAAACCACACAAAGACTCAACAAAGA
AAGAGAATTTCAGACCAGTTTACAAACCAAATCCAAGCACACATCAAAAT
GATCATTTACCATAATCAAGTAGGCTTCATCCCAGGGACACAAAAAAGTT
CAGTGTATAGAAATCCATTCACTATATATATATATATATATAAATAAACA
AACAAACAAACAAAAAAACTCGGTCACAAGCCCCTTCCAGTTGGCACCAG
CACCGGGTCACCTTGGGCACAGAGTCGGCGGACACCCCCAAGGTCCCCTA
GAGGACTCTCCACACAAGCTTAGGACCACTGGATGGAGGTCCAAACACAA
GGTATCTGTGCTCCTTCCCTGTAAGAGGAGAGCTTGCCTGCAGAGAGTGC
TCTGAAAACTGAAACTCAGAGGAGAGAGCTAGTCTCCCAGGTCTGCTGAT
AGAGGTTAACAGAATCTCTTGAGACATTATCTCTAACCAGAGACAACTAT
TAAAACTAACTACCGAGATTACCTGATGCCTATCGGCAAAGGCAAGAATC
TTACTAT
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCACTCTCCAAAACTGCAGA
GGCCAAAAATGTCTAGTCTAATAGTTCTGAAATCCCAGAGTCAGGAAAGC
CTTGGGGGAGGGTGGAGAACTGGTGAGTGGGGGAAGGGGGAGAGAAAGAC
CATCATAAGAACCCAAGGAGAAATCCCAGAAAGGCCAAGGGAACCAGAGG
ACCCGGGAGGCCTATGAGTGGGAGCCCCACAAGTGGTCGTTGCGTAGAGC
ACGACCCTACGACCAGACAGTTCTTTTCTTGCGCTCCACACTATGCCTTA
CCGCGCACCATGTTTTGTCCCCCCCCCCCCCGCGGCCCATACCCCTCTAC
AGAGCGTCTTCCTCTCGCACCCCTTGACTTACCCTGCCCCCTCTCGCCGC
CTGTATCTCCCCCCCCTCCCGCCGTTTCGCCTGCCCTCCCCTATATTTCA
TCCCCTCCCTACCATGTTATTTCCTGTCCCCTTCCCCCCCCCCCCCCTTT
CTCCTCTGATTTCCTTCCCCCCATTTCCTCCCCTACTCCGACCTTTCCCT
TCTTGTTTCATACCCTCTCCCCCCCCCCCACCTTCCCCCCCCTCCCTTTT
TTTTTTTATTTCCCCCCCTTCCCCCCCCCCCCCCCCTTCCCCTTCCCCTC
TTTCCCCCCTTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_a06.g1 MSMg01no087_a06.g1 CHROMAT_FILE:
MSMg01no087_a06.g1 PHD_FILE: MSMg01no087_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:58 2005
         (125 letters)



>mm_chr18_16964944_16965468
          Length = 525

 Score =  242 bits (125), Expect = 7e-69
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccactctccaaaactgcagaggccaaaaatgtctagtctaatagttctgaaatccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccactctccaaaactgcagaggccaaaaatgtctagtctaatagttctgaaatccca 260

                                                                       
Query: 61  gagtcaggaaagccttgggggagggtggagaactggtgagtgggggaagggggagagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcaggaaagccttgggggagggtggagaactggtgagtgggggaagggggagagaaa 320

                
Query: 121 gacca 125
           |||||
Sbjct: 321 gacca 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 525
Length adjustment: 8
Effective length of query: 117
Effective length of database: 517
Effective search space:    60489
Effective search space used:    60489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)