Query= MSMg01no087_b12.b1 MSMg01no087_b12.b1 CHROMAT_FILE:
MSMg01no087_b12.b1 PHD_FILE: MSMg01no087_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:05 2005
(288 letters)
>mm_chr18_88829526_88830214
Length = 689
Score = 474 bits (245), Expect = e-138
Identities = 275/285 (96%), Gaps = 1/285 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggttcagcaagacgccctgtctcaaaagcaaatgataaataaattgggtaga 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggttcagcaagatgccctgtctcaaaagcaaatgataaataaattgggtaga 264
Query: 65 gtgtaatagaggaaaa-acctacttccaagctcatgtacacaaacatgtatactcatata 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgtaatagaggaaaatacctacttccaagctcatgtacacaaacatgtatactcatata 324
Query: 124 catcacaaacacagaagaaagtaatttttaaaaagcgcatgcaaatctgtaagcaagtac 183
|||| || ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 325 catcgcatacacagaagaaagtaatttttaaaaagtggatgcaaatctgtaagcaagtag 384
Query: 184 aataactcaattagtaactctacccaaactgaaatattcaaaaaataaaattttgtattt 243
|||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 385 aataactcaattaggaactctacccaaacttaaatattcaaaaaataaatttttgtattt 444
Query: 244 atgatagctacctgttctcaattacacagttgagttttataagtc 288
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgatagctacctgttctcaattacacagttgagttttataagtc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space: 189720
Effective search space used: 189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no087_b12.g1 MSMg01no087_b12.g1 CHROMAT_FILE:
MSMg01no087_b12.g1 PHD_FILE: MSMg01no087_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:05 2005
(345 letters)
>mm_chr18_88913722_88914469
Length = 748
Score = 598 bits (309), Expect = e-175
Identities = 336/347 (96%), Gaps = 5/347 (1%)
Strand = Plus / Minus
Query: 1 tgactttatttagtaaaattggttattgacaatttttgaaaagagaattgactaatgaac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgacttt-tttagtaaaattggttattgacaatttttgaaaagagaattgactaatgaac 488
Query: 61 taaggttttaaggtggttgttttatgatacagcttccataggaggggcatggctggatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 taaggttttaaggtggttgttttatgatacagcttccataggaggggcatggctggatga 428
Query: 121 tattgaaacattccaggaatatcttgccttttatagaacacgtcactactgtaatctttg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 427 tattgaaacattccaggaatatcttgccttttatagaacacgtcgctactgtaatctttg 368
Query: 181 ----ctaagcgcaaagggggatgaaccctagcttgatccattgccagcctagtttcatct 236
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttgctaagcggaaagggagatgaaccctagcttgatccattgccagcctagtttcatct 308
Query: 237 ttagaattctcagggttattctacagcgtctttcaaacagctgattttctttcaccctgt 296
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 307 ttagaattctcaggggcattctacagtgtctttcaaacagctgattttctttcaccctgt 248
Query: 297 cctcataattttgttttctttttctagacattacaacctaattaaaa 343
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cctcataattttgttttctttttctagacattacaacctaattaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 748
Length adjustment: 9
Effective length of query: 336
Effective length of database: 739
Effective search space: 248304
Effective search space used: 248304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
