BAC Information

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BAC

Clone NameMSMg01-087I12
Chromosome18 (Build37)
Map Location 18,113,890 - 18,113,993
singlet/doubletsinglet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087I12.T7 (MSMg01no087_i12.b1)MSMg01-087I12.TJ (MSMg01no087_i12.g1)
ACCAG306536AG306537
length698694
length of high quality
(start - end)
104 (70 - 173)428 (76 - 503)
definitionCHROMAT_FILE: MSMg01no087_i12.b1 PHD_FILE: MSMg01no087_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:41 2005CHROMAT_FILE: MSMg01no087_i12.g1 PHD_FILE: MSMg01no087_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATTTTACATTTTCTGACTCTGTGAAAGAAAATATTTGAATT
CTATGGAAGATATCTCCCAGTCTTTTTCTGTTCTCCACTCTGGTGAATCC
ACTATTTTTTAATTTACTTCTAATATGATAATAAAATATTATTTCTCATT
TCTCATTTCTTTTCCAAACTCATCCTGCCCTTCATCATATTCAATGCATA
AGCTACCCATCAGTTATCTATTTACCTATGTAACCTCACTATTTCCTATA
TTTTATCTATCAGTCATTCTGTTCTGTCTACTTACCTACACACCTAATCC
ATCTCCTGCTGTGTGCCCGTAATGCTTGCCCCTCCTGAACACTAATTGCT
ATTGAACCATTACCCCCATTTTGATTATCTCACAACGCGCTATCCCGATT
ATAATCTATCTTGAGACTTCTGGACTTATTCATCAACTCTTGTTATAATT
TTTCCACTTTGCCTCCCAGTTCACAATTTACACATTGCCTCCTCCTCTCT
TATTTTGCTGTCTCCCCCCCTATCCCCGCCCTGTTCTCCATCTTGTTTCC
CTCAAATTATTTCCCATTTTTCCCCTTCCTATACTCTATTATCCCCGACT
CCTTTCTCCCCCTTTTTTCCTTCTTTTATCTCTTATCAAATATTTCGT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGAGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCATATAATTGGACATAGTACTACAGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAATA
AGAACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCATATGCCCCTCAACAGAGGAATGGATACAAAAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGTTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAACGGATGGACCTGGAGGTTATCATCCTGAG
TGAGGTAACACATTTCCAAAGAAACTCATTATATATGTACTCACTGATAA
CTGGATACTAGCCCCCAACCTAGGATACTTTACATATACCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_i12.b1 MSMg01no087_i12.b1 CHROMAT_FILE:
MSMg01no087_i12.b1 PHD_FILE: MSMg01no087_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:41 2005
         (104 letters)



>mm_chr18_18113690_18114193
          Length = 504

 Score =  201 bits (104), Expect = 9e-57
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgactctgtgaaagaaaatatttgaattctatggaagatatctcccagtctttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttctgactctgtgaaagaaaatatttgaattctatggaagatatctcccagtctttttct 245

                                                       
Query: 61  gttctccactctggtgaatccactattttttaatttacttctaa 104
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gttctccactctggtgaatccactattttttaatttacttctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space:    47616
Effective search space used:    47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)