BAC Information

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BAC

Clone NameMSMg01-088C05
Chromosome18 (Build37)
Map Location 48,185,414 - 48,185,530
singlet/doubletsinglet
Overlap genenone
Upstream geneCommd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
Downstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088C05.T7 (MSMg01no088_c05.b1)MSMg01-088C05.TJ (MSMg01no088_c05.g1)
ACCAG306974AG306975
length699769
length of high quality
(start - end)
117 (117 - 233)96 (187 - 282)
definitionCHROMAT_FILE: MSMg01no088_c05.b1 PHD_FILE: MSMg01no088_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:30 2005CHROMAT_FILE: MSMg01no088_c05.g1 PHD_FILE: MSMg01no088_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATC
TCTCCTATCCTCTACCCTCATTCATATAGCTTTAGATTACCATCTGTCAA
CTTGAAGGTTTCCCCCCACACCTCTGAAACATTCATGCCAGGCTAGAAGA
GTACAGAAGCCACTATTTCTTTCTTTAAAGTACACTCATGTCAGATACCA
CCCTGAGTGTGCCTGATCGCAGAAGCCAAGGAGCAGCGGCTCTGGCTGGT
ATGTGGATATGACATCACTCTCATTCTTTAGCCTCATTCTTCACCTGCAT
GCTGATGTCTGCAGATACCATTTCCTTTCTCACTCCATCTAGAGTCACTG
CCTATTTATCACCACCCCCCTTCTTACCTACTCGTGTCTGATTATTTTCT
TCCACACACCCGCCCGGAAATATATTTTATTTGCTTACGATGTGTCCCTT
TTTGCATGTACTGTCTGTTTTTGTTTGCCAAGTTTGGCCTAACTGCACTT
ATCTATAACTACCGTACACTCCCCTTGTATCAACGTGATCTCTGCAGACC
AGTTTCTACACATTTTTTCTCTATTTACTGTATTCGCGCTGTCTTCCCCC
CTTTTATGGATGCTGTTACGCCCCGGCGTTGCGTATATCTTGAACTATTA
TACCAAAAGCATCCTTTTTCTTGTATATCCTATATCCACTTTTTCTCCG
NNNNNNNNNNNNNNNNNNNNNNTTTTTTTNNNNNCCCCCNNCCCTTNTTC
TTCCTCTTTTTATCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAA
TACCGAATGGCAGAGAAGCACCTGAAAATTGTTCCACATCCTTAATCATC
AGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAG
AATGTCTAAGATCAAAAATTCAGGTGACAGCATATGCTGTCGTGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGAATTGCAGGCTTGTACAA
CCACTCTGGAAATCCGTCTGGCGGCTCCTCAGAAAATTGGACATAGTACT
ACCGGAGGATCCAGCAATACTTTTTTTGTGCATATACCCAGAAGATGCCC
CAATTGTTAAGAAGGACACATGCTCCACCACGTTCATAGAATCCATTATT
TATCATAGCCCGAAGCTGTAAAGAACCCAGATGCCCCTCATCAGATTAAT
GTATACAGACACAGCTGTTATATTCTACACATTGTTGTACTATTCCGTCT
ATTATCTATGAATGACTTTTACGATATTCCCTAGCCAAATTGTAAGAACA
TGATATTTCATTCATTTTAGATTGAGACAATAATAATTATATACGTACTT
TATAATATATTGAATTCTACGGACATATCGTAAATTAACCCCACAACCTA
CGATACTTCTTCTGTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_c05.b1 MSMg01no088_c05.b1 CHROMAT_FILE:
MSMg01no088_c05.b1 PHD_FILE: MSMg01no088_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:30 2005
         (117 letters)



>mm_chr18_48185214_48185730
          Length = 517

 Score =  226 bits (117), Expect = 3e-64
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacctctgaaacattcatgccaggctagaagagtacagaagccactatttctttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacctctgaaacattcatgccaggctagaagagtacagaagccactatttctttcttt 260

                                                                    
Query: 61  aaagtacactcatgtcagataccaccctgagtgtgcctgatcgcagaagccaaggag 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtacactcatgtcagataccaccctgagtgtgcctgatcgcagaagccaaggag 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)