BAC Information

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BAC

Clone NameMSMg01-088N11
Chromosome18 (Build37)
Map Location 40,467,673 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088N11.T7 (MSMg01no088_n11.b1)MSMg01-088N11.TJ (MSMg01no088_n11.g1)
ACCAG307492AG307493
length593712
length of high quality
(start - end)
164 (31 - 194)337 (74 - 410)
definitionCHROMAT_FILE: MSMg01no088_n11.b1 PHD_FILE: MSMg01no088_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:27 2005CHROMAT_FILE: MSMg01no088_n11.g1 PHD_FILE: MSMg01no088_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:27 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAAATTGGGCGCTATACACTCCTTCCGGAGAGATCCGCGAATTCTTTGTT
CCTCTAGCCCCATTTTTTATGGGGTTATTTGATTTTCGAAGTCCACCTTC
TTGACTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATA
GGTAAAGATCCTTTCCCTATCTGTTGGTGGTCTTTTTGTCTTATTGACNG
GGGTCTTTTTGCCCTTGCAGAAAACTTTTGGAAGTTTTCATTAAGGGCCC
CCCTTTTGGGCAATTTCCCCGAATTTTTACAGGGACCAAAAGCCCTTTGG
GGGGGGTTCCCGGGTACCCAAAAAATTTTTTTTTCCCCCTTTGGGGGGCC
CCAAAAAATTTTTTTTTTGGGGGGTTTTTTTTCCCCCCCCCCCCCTTTTT
TTCCCCCCCCTCCTAAAAATAAAATCCCCTCTCTTTTGGAGCCTCCCTTT
CTCCTCGTGCGTTTTTTTTATTTTGTCGAGGTTGGAAACCGCGATCTTTT
TTTCCTCTCTTTGGTTTTACTCCTTCCTCTCTTTCTATTTTAAACTTTTT
ATTTTCTCCCCCCCCCCCCCCCCTACCTTCACTTTTGTTTTTC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCA
CATTTGCTCTGGCTCTGGCCACTGACTGAACCAAACAATTAGGCTCATAC
CTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAG
AGGAAGGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTGTCA
GCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGG
AATTTCTACTTCATGTTTAATTTTTTTTTTTTTTTTTTTTTTTTTGAGAC
AGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA
GGCTGGCCTCCAACTCAGAAATACACCTGCCTCTGCCTCCCGAGTGCTGG
GATTAAAGGCGTGCACCACCACGCCAGGCCCCATGTTTAATGTTTAGCAA
ACATTTAATAAACATTTAATAAACATTGTGAAGGTCTGAAGAGATGGATC
AGCAGTTAAGAGCATTGACTTTTCTTGCAGAGGTCCTGAGTTCAATTCCC
AGGAATCACATGGTGCCCTTGGAACCCCATGCACACTTTTGGTGTGGGCG
TGAAAAAAGCTGTTTTGGACTCATATCACTTTATATTATCCAAACTTTCT
TAATTATAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_n11.g1 MSMg01no088_n11.g1 CHROMAT_FILE:
MSMg01no088_n11.g1 PHD_FILE: MSMg01no088_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:27 2005
         (337 letters)



>mm_chr18_40467473_40468208
          Length = 736

 Score =  379 bits (196), Expect = e-109
 Identities = 235/248 (94%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggccactgactgaacca 60
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 447 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 388

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 387 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 329

                                                                       
Query: 121 cagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctgtcagca 180
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 328 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 269

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 268 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 209

                   
Query: 241 tgtttaat 248
           ||||||||
Sbjct: 208 tgtttaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 736
Length adjustment: 9
Effective length of query: 328
Effective length of database: 727
Effective search space:   238456
Effective search space used:   238456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)