BAC Information

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BAC

Clone NameMSMg01-088P18
Chromosome18 (Build37)
Map Location 68,478,567 - 68,478,837
singlet/doubletsinglet
Overlap geneRnmt
Upstream geneB430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik
Downstream geneMc5r, Mc2r, LOC100043380, EG225681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088P18.T7 (MSMg01no088_p18.b1)MSMg01-088P18.TJ (MSMg01no088_p18.g1)
ACCAG307599AG307600
length770741
length of high quality
(start - end)
266 (40 - 305)271 (75 - 345)
definitionCHROMAT_FILE: MSMg01no088_p18.b1 PHD_FILE: MSMg01no088_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:38 2005CHROMAT_FILE: MSMg01no088_p18.g1 PHD_FILE: MSMg01no088_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACTGAGGAATCCCCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACA
TTCTTTTTTTTTTTTTGCTTTTATTTCTTTTTTTTCCATTTTTTATTACG
TATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCC
ACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGT
TCCCCTGTACTGGGGAATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTT
CCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGGCA
AGAGCTCCGGGGTACCGCCCACTATATAATGTTGTTTCCCCCTATTGGGT
TGCAGATCCCTTTCACCCCCTTGGGTTCTTTTCCCTAGTTCCCCCGTGGG
GATTCCCGGTGATCCCTCCCCTTACTGCACTGTGTACCCCCCCCTTCTGG
CGTTGGCCATTTCCCCAGCTCCCCCCTTTACCAGTAACACCTCCCCCCCC
CGGTTTCCTTTCCCATTATTTTTCTGTTTTCCGCTATTTCTATGGTGTTA
AAGCATTCTGGGACGGCGTATACTCCGCGCTTGTCCACCCCCTGATCACG
GGCCCCCCCCTAAATTTTGTCACACCTCTTCTTTCTCCCCCTTTCTTACC
TTTCTGGCTTCGAATGCCCCCCCTTCTATGGGTCCCTTCTTTCCTCCCCT
TTCCTGTTGACGCCCTCCTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTGTAGAGCAGATGGCCTTCAGA
CTTGCAGCAGTCCTCTTCCCCTTCCTCCCGCTGGGCTCCAGGCCTGAGGC
CCATCACACCTGCTGTGCTCGCACTCAACCGGAGAAAGAAGCAAAGCAGT
GGATTGTTTTCCGTGTTTACTCTGTTAAACTTAAAAATTGCTGTGCGCTC
TCTTCACTAGAATTTGCGTTTTCCCATAGCAATACCCTGCACATGAGAAC
TCTAAACTTGCCTCTGAAAAGGTGGGTGACTACCTGCATGCAGCAGAGTA
CCTGAAGAAGAGCAAGTGAGGTACCTCTGGTAAGTGCCAGTGTTGACAGA
AAAAGGAGCAAGTGCCCTGTGGAGACTTAGCTTATTTCCCTTTGTTTACA
AGAACTGGGGCTCCCTAAAATGGCAGTTTGGCCAAGCTCAAAACCTGTTT
CCCCCTTAATGGGGCTGGACTTTGGAAGGTGGAAAAAAAAAAAACCGGGG
GTTAATTTCGGGGAACGGGGATAAAAAAAGTTTTTTTTTAAACGCCCCTT
AAGGGGGGGGAAATGGGGGGGGGGCAAAAAACCCCAAGGCTTTGGAAACA
CAAAAAGGCTTTTTTCGTTATAACCACAAAAACTCTCCCAAGAAAAAAAT
AATTTCCCCCAAACTTCTCTGGGGAATTTTTCATATGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_p18.g1 MSMg01no088_p18.g1 CHROMAT_FILE:
MSMg01no088_p18.g1 PHD_FILE: MSMg01no088_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:38 2005
         (271 letters)



>mm_chr18_68478367_68479037
          Length = 671

 Score =  495 bits (256), Expect = e-144
 Identities = 268/272 (98%), Gaps = 2/272 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgtagagcagatggccttcagacttgcagcagtcctcttccccttcctcccgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgtagagcagatggccttcagacttgcagcagtcctcttccccttcctcccgctgg 260

                                                                       
Query: 61  gctccaggcctgaggcccatcacacctgctgtgctcgcactcaaccggagaaagaagcaa 120
           |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 261 gctccaggcctgaggcccatcacatctgctgtgctcacactcaaccggagaaagaagcaa 320

                                                                       
Query: 121 agcagtggattgttttccgtgtttactctgttaaacttaaaaattgctgtgcgctctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagtggattgttttccgtgtttactctgttaaacttaaaaattgctgtgcgctctctt 380

                                                                       
Query: 181 cactagaatttgcgttttcccatagcaataccctgcacatgagaactctaaacttgcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactagaatttgcgttttcccatagcaataccctgcacatgagaactctaaacttgcctc 440

                                           
Query: 241 tgaaaaggtgggtgactac-ctgcatgcagca 271
           ||||||||||||||||||| | ||||||||||
Sbjct: 441 tgaaaaggtgggtgactacac-gcatgcagca 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)