Query= MSMg01no090_e11.b1 MSMg01no090_e11.b1 CHROMAT_FILE:
MSMg01no090_e11.b1 PHD_FILE: MSMg01no090_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:23 2005
(309 letters)
>mm_chr18_68437001_68437709
Length = 709
Score = 545 bits (282), Expect = e-159
Identities = 304/322 (94%), Gaps = 17/322 (5%)
Strand = Plus / Plus
Query: 5 gaattctgaatttatacttttccagaggagttttatggtcttcatatctccttactgtca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaatttatacttttccagaggagttttatggtcttcatatctccttactgtca 264
Query: 65 ttcatatctcatgctatgtgaccttctggttccttcctatcttccacttaactttttaaa 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 ttcatatctcatgctatgtgaccttctggttcctttctatcttccacttaactttttaaa 324
Query: 125 gacttatttgtatttcagtatgtatgtgcagatacctg-----------------tcagc 167
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 gacttatttgtatttcagtatgtatgtgcagatacctgaagaaaccagaaacctgtcagc 384
Query: 168 tctcctggagcaggagttgcaggcagttttcagtctttcaacatgagtgccggaaacttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcctggagcaggagttgcaggcagttttcagtctttcaacatgagtgccggaaacttg 444
Query: 228 tgtctacttggaagattggcaagtgcttttagtgaccaagttatttctccagaccatttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtctacttggaagattggcaagtgcttttagtgaccaagttatttctccagaccatttt 504
Query: 288 ctacttatataccccaggggtg 309
||||||||||||||||||||||
Sbjct: 505 ctacttatataccccaggggtg 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_e11.g1 MSMg01no090_e11.g1 CHROMAT_FILE:
MSMg01no090_e11.g1 PHD_FILE: MSMg01no090_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:23 2005
(279 letters)
>mm_chr18_68509148_68509826
Length = 679
Score = 482 bits (249), Expect = e-140
Identities = 266/279 (95%), Gaps = 12/279 (4%)
Strand = Plus / Minus
Query: 1 tcacctggggctacttgagtttaccaactggtggagggctgggtgcaaggcagaaccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcacctggggctacttgagtttaccaactggtggagggctgggtgcaaggcagaaccaaa 374
Query: 61 aaacctgttcactgccacctactggcgtgaaagagtttgacaattaactttgtaagcgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaacctgttcactgccacctactggcgtgaaagagtttgacaattaactttgtaagcgtg 314
Query: 121 ttttactgcagagttgaaaggatgcctctggccagggaccccccaagactacaaactgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttttactgcagagttgaaaggatgcctctggccagggaccccccaagactacaaactgtg 254
Query: 181 ggctcatctcctttggctcgattatgctcttttgttgaattagctgttttctgcttagga 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 253 ggctcatctcctttggctcgattatgctctattgttgaattagctgttttctg------- 201
Query: 241 ttcttaacaagaccaaagactgagcaaggtggcagagca 279
||||||||||||||||||||||||||||||||||
Sbjct: 200 -----aacaagaccaaagactgagcaaggtggcagagca 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
