BAC Information

Click to search

BAC

Clone NameMSMg01-090H06
Chromosome18 (Build37)
Map Location 32,672,813 - 32,673,016
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
Downstream geneGypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090H06.T7 (MSMg01no090_h06.b1)MSMg01-090H06.TJ (MSMg01no090_h06.g1)
ACCAG308681AG308682
length706715
length of high quality
(start - end)
319 (45 - 363)205 (79 - 283)
definitionCHROMAT_FILE: MSMg01no090_h06.b1 PHD_FILE: MSMg01no090_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:37 2005CHROMAT_FILE: MSMg01no090_h06.g1 PHD_FILE: MSMg01no090_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGCAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTCTAT
CACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCCTGCGCCG
GTCCCGAGTTTTTTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATT
AGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAAAATCTTC
TGCGGCAAAACTTTATTGCTTACATCTTTGGGAGCCAGGAGAGCAAGCGC
CCAGCGCCCAGCCCCAGAAACGAAAGCCCCTTCAATAATTTTAGGAGCCA
GAGCTCCGGCGTGCTTTAGCGCACAGCGCTGCTCTATTGTTTACATCTTT
AGGCAGCGAGCGAGCGCAGGCCGCGCAGAGCCAGAGAGATGCCAGCGAGA
GAGAATGGCGTAATACCCCGTCCCCTTTATGGAGGAGTGACCCTTTCACT
TATGAAGCATCACCCCCCTGATTGCTTGCCGCCCATGTTCGAACTGACGT
TCACGGTAACAGTTGACTACTAGTAGTCATTAAATATCCCTTGGTTCTTG
CTTCGAATTATTTGGTTTACACTTAGAACCTCGCGTTGTCACCCCCACCT
TGTGGATGCCGAATGTGGGGTGCGGTCTCTCAACACTCTCCCGTTCTCCT
TTCCCG
NAAACATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTGCTTGTTGAACAAGTAC
TTATAGGGAGAGGGGAACTTGTATTTTGGCCACCAGGCTACACTAGTACC
TCAACAGTGGTGGAGGTAGGGGTTTTACAAGCTGCGTGCACTGGGCAGAC
TCAGAGCAACAAAGGGGCAGTCCTAACTTCTGCCAGTATAAGGATAAAAT
TGGGGGGAAGGGATTAAACACATCTGAACTTCTTTCTTGCTCCAAATTAG
CTCCTGCCCCACAATTTCCCACTCTTCCAATAGAAAATTGCTACTCGATC
TATATACTTTTTTTTCCCATATTTTTATTCCCCCCCCCCCCCAAAGGTAT
GTTTTCATTAGCAGAGTCTGGTACACCCCCATTAATATTTTGTAAATTTT
ATTTGTCTGATTAGCCCCCTTATACTTGTTTCCTCACTACATCTCATCCC
ATTCCCTCGTAATTCTATTCCCCACCTTTCTAAATGTCTTCCTGCGCCTT
TTTCTGTTATATATTATCCTATTCTCCTTTGTTTTCCATCTTCCTTTCCC
TCTCTCCCAATATTCATATTTCCATTACCTGCCGCCTTTTTTCTCTTACT
TTACTTTTCCCCTTTCCCTTCCATTCCCCTCGTGTACTGGTTTTTTCCCA
TTCCCCCTACTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_h06.g1 MSMg01no090_h06.g1 CHROMAT_FILE:
MSMg01no090_h06.g1 PHD_FILE: MSMg01no090_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:37 2005
         (205 letters)



>mm_chr18_32672613_32673217
          Length = 605

 Score =  395 bits (204), Expect = e-114
 Identities = 204/204 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtgcttgttgaacaagtacttatagggagaggggaacttgtattttggccaccaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caggtgcttgttgaacaagtacttatagggagaggggaacttgtattttggccaccaggc 345

                                                                       
Query: 61  tacactagtacctcaacagtggtggaggtaggggttttacaagctgcgtgcactgggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tacactagtacctcaacagtggtggaggtaggggttttacaagctgcgtgcactgggcag 285

                                                                       
Query: 121 actcagagcaacaaaggggcagtcctaacttctgccagtataaggataaaattgggggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 actcagagcaacaaaggggcagtcctaacttctgccagtataaggataaaattgggggga 225

                                   
Query: 181 agggattaaacacatctgaacttc 204
           ||||||||||||||||||||||||
Sbjct: 224 agggattaaacacatctgaacttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)