BAC Information

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BAC

Clone NameMSMg01-090K22
Chromosome18 (Build37)
Map Location 25,283,636 - 25,283,848
singlet/doubletsinglet
Overlap geneFhod3
Upstream geneGalnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos
Downstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090K22.T7 (MSMg01no090_k22.b1)MSMg01-090K22.TJ (MSMg01no090_k22.g1)
ACCAG308845AG308846
length715735
length of high quality
(start - end)
213 (112 - 324)75 (139 - 213)
definitionCHROMAT_FILE: MSMg01no090_k22.b1 PHD_FILE: MSMg01no090_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:55 2005CHROMAT_FILE: MSMg01no090_k22.g1 PHD_FILE: MSMg01no090_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGTAGACTTACCTTCATCTACCTTTTATGGAAAAAGAAAAGAGACTCT
CTAAGAATAAGTGGCTTGCCCCAGGTCACAAATGTGTTGAGCATCAGACC
ACAGAACAGAACATGCCAGATAAATTCAGCCTGAACTTGTCAAGAACATA
GATGCTTGCTGTAACAAGCATTCTAAACCCAGGCTGGTTTTCTCTAAACT
GCAGGGTGTATATGTTTTCTGAGGTGTGTTCCAGAACTCTATATAGAGCT
TTATATGCACACAATGCTTATATCTGAGTGAAGAACAAGAACATGATCTT
GGACCAAGATTTTTTTCCCGCCCCCGCTCCTCATCCAGTGCTACATAACT
GTGGCAAATCTGTGACTTACTCTGTCTATGCACTTTCCTTCCTCGGTCTC
CAGTACCCACCGTAACTCTTCACCTTTCTTCCTGACTCTGGAATGATCTG
AATATTTATCCTGAATCGTTTTTACTTTTGTTTCCACTGTTGTGAATTAA
TCTATAGTCTTCTTATTCTCATTCAATACCTGTATTATTGACTTCCATAC
CCACTCTGATCCAAATATATTATATCCATCTACATGAACTATATTAATAA
TTACAAATCTTGTAATTTCCCTGTATAAAAACTCTTCATATTTCTTTTTT
ATAATTCAATAACAC
CATGACCGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTCCCCTGTAAAAATCTAGGTGCATG
CCTGTAATTTGGGTGTTGGTTAGGCAGAAGAAGGGGGGATGTCAGGAGGT
TGTCTAGACTGGCCAGCTAGTCTAGCCTAATTGCTGAGATCCAGCGCCAG
TGAAAGACTGTCTCATAAAACACCGCAGAACATGATTGTAGAAGCCCTGA
CGTTTATTGCTGGCCTCTAATTGTACACAGGCGAATTTGTGTCTGCGTAC
CTATACACAGATGTATAAATAATGTTATTAAACATCACATCTATTTCTGC
TTTGTTAATTTTTTTTTTATCCCCTCCCCCCCCCATTATTAATATATAGT
TTATGCTTCTCGTCTACTCGCTACAAAAAATAAAAATTAAAATGTTGAGA
TTGTTAGTTCATGGTTTATAGTTCTGTATTTCAATGTTCTTAATTATATG
TTATGAAACCTATCATATATTGAGTATTGTATATTTAATTTTTATTTATA
TTCTCATTCTTTATTCTTAATTTTATTTATATTTTAAGACAACTTTTTTT
AATTTAAATTCCATACCTACATAACATACTTTATTAATATATTAACACAT
ATTACTTCTCTTATTATTTTCTCTTTTTACTATATATATTTATTATAACA
TCTCCTCTAATCTTCCTTCCTTTTATTTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_k22.b1 MSMg01no090_k22.b1 CHROMAT_FILE:
MSMg01no090_k22.b1 PHD_FILE: MSMg01no090_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:55 2005
         (213 letters)



>mm_chr18_25283436_25284048
          Length = 613

 Score =  373 bits (193), Expect = e-108
 Identities = 208/213 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcttgccccaggtcacaaatgtgttgagcatcagaccacagaacagaacatgccagat 60
           |||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tggcttgccagaggtcacaaaagtgttgagcatcagaccacagaacagaacatgccagat 354

                                                                       
Query: 61  aaattcagcctgaacttgtcaagaacatagatgcttgctgtaacaagcattctaaaccca 120
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 353 aaattcagcctgaaattgtcaagaacgtagatgcttgctgtaacaagcattctaaaccca 294

                                                                       
Query: 121 ggctggttttctctaaactgcagggtgtatatgttttctgaggtgtgttccagaactcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggctggttttctctaaactgcagggtgtatatgttttctgaggtgtgttccagaactcta 234

                                            
Query: 181 tatagagctttatatgcacacaatgcttatatc 213
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tatagagctttatatgcacacaatgcttatatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)