XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGAT
ATATTTCTATATTTTCAGATACTGTTTAAATATGCAGCTAAATATAAACA
AAGGACTCATGCTATGTGACTTCAACCAGGCCTGGTATATGAGGAAGGTT
ATCCTTATACAGCATAATTGGAACTGTCAGTCCATGTCAAAAGTTTGTAA
TAAGTTCTCAGAATAAGCTTCACACTATTAGTCCTACACAAAGTATCATG
GAAGATTTTCATGTAGGAGTTTTAATTCTATTGTAGGATCTACAATCATA
GAGTCATTTTGAAGATAAGTATCCAATACAAATCTTGTCCTATAACTCTA
TTTATTAGCACCCTGTCCTTTCCCACAAGTCACTTCCCATTTCTAGAACA
TAAACACCTTTTATACATATACCATAAATTGCTTATTTTATTTAGTTTGC
CTAAATTTTTCCAGTAAATTTTCTTTGAAGAGTTACAAGCTCTGGTTTAT
TTAGAAGTATCTCTTTTGTAACTTCTCCAGGATTGATTTCAGTTCTATTG
CTTGTCTTTGGTGAAGCATATCTAGTGTACATGAACTTATATGAAGGTTT
TTTTTTACACCCTATGATACTTACCAGAAAGTATACAGGACGCACATAAT
ATTTATTCCCTATCTTAAAATTATAGACGAATCGAGATTCCAAATTGTTC
ACAGAACAATTAATTACTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTTTGGGCTGAATAGCAGAATGTTATGTGCTTTCTAATGACTAT
TCTTTTCTGCTAGAAGTATTTGTGCCATTTGGAGATGTTCACTCTGTGAT
AAATTAGTGTGATTAGAGCTGGCTAGCTACTTGCCATTTGTTACTAGACA
GGCCTGCAAGTGAGATTGTGCTTTGTCTTGCCTCAGGTCAGAGAGGGCCT
GTACAGGCTTTAATGAGACTCAACCTTAATTCTTTACACTTGACATGATA
ATTTTTGTAAGTCACAACTGCCTTTTACACATGGGCTGTTTATTTGTTCA
CCCCCACCCCCAATATCATTTGCTCCATGTGATGCCTTTATGATCCACTT
CCTTGAATTGAACTATTCTGGAAATTGAGAAAGTCTCCTATTGTGATTTA
ATGAACAACTTTTGCCTAACTTTGGCAAAAATGCAGATGTATTCTCTAAG
ATTTTTTTAAGACTTTTTTCCGTCTTGTCTGGTTGGCCCTATGTATTTGA
GTTTAGATGAAGCTCATGATATTTTCTTGTGTTAGCACTACACTACAGTA
TAGAGTTGTTGCTGGAGTAAAAGCCTAAATAACTTTTCTGAAGGACTCGC
CATATTTACTGCCTAGATCAATGTCCAATTAGAATGCCAGTCTACATAAA
CTGTTCTA

Query= MSMg01no090_o15.b1 MSMg01no090_o15.b1 CHROMAT_FILE:
MSMg01no090_o15.b1 PHD_FILE: MSMg01no090_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:14 2005
         (317 letters)



>mm_chr18_19482884_19483600
          Length = 717

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggatatatttctatattttcagatactgtttaaatatgcagctaaatataaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggatatatttctatattttcagatactgtttaaatatgcagctaaatataaac 264

                                                                       
Query: 65  aaaggactcatgctatgtgacttcaaccaggcctggtatatgaggaaggttatccttata 124
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 aaaggactcatgctatgtgatttcaatcaggcctggtatatgaggaaggttatccttata 324

                                                                       
Query: 125 cagcataattggaactgtcagtccatgtcaaaagtttgtaataagttctcagaataagct 184
           ||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 325 cagcataattgcaactgtcagtccatgtcaaaagcttgtaataagttctcaaaataagct 384

                                                                       
Query: 185 tcacactattagtcctacacaaagtatcatggaagattttcatgtaggagttttaattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcacactattagtcctacacaaagtatcatggaagattttcatgtaggagttttaattct 444

                                                                       
Query: 245 attgtaggatctacaatcatagagtcattttgaagataagtatccaatacaaatcttgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attgtaggatctacaatcatagagtcattttgaagataagtatccaatacaaatcttgtc 504

                      
Query: 305 ctataactcta 315
           |||||||||||
Sbjct: 505 ctataactcta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no090_o15.g1 MSMg01no090_o15.g1 CHROMAT_FILE:
MSMg01no090_o15.g1 PHD_FILE: MSMg01no090_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:14 2005
         (285 letters)



>mm_chr18_19647140_19647824
          Length = 685

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttgggctgaatagcagaatgttatgtgctttctaatgactattcttttctgctagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtttgggctgaatagcagaatgttatgtgctttctaatgactattcttttctgctagaa 424

                                                                       
Query: 61  gtatttgtgccatttggagatgttcactctgtgataaattagtgtgattagagctggcta 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtatttgcgccatttggagatgttcactctgtgataaattagtgtgattagagctggcta 364

                                                                       
Query: 121 gctacttgccatttgttactagacaggcctgcaagtgagattgtgctttgtcttgcctca 180
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 363 gctacttgccatttgttactagacaggactgcaagtcagattgtgctttgtcttgcctca 304

                                                                       
Query: 181 ggtcagagagggcctgtacaggctttaatgagactcaaccttaattctttacacttgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggtcagagagggcctgtacaggctttaatgagactcaaccttaattctttacacttgaca 244

                                                      
Query: 241 tgataatttttgtaagtcacaactgccttttacacatgggctg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgataatttttgtaagtcacaactgccttttacacatgggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)