BAC Information

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BAC

Clone NameMSMg01-091H18
Chromosome18 (Build37)
Map Location 30,219,075 - 30,219,364
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040930, 4930578E11Rik, LOC666073
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091H18.T7 (MSMg01no091_h18.b1)MSMg01-091H18.TJ (MSMg01no091_h18.g1)
ACCAG309422AG309423
length804753
length of high quality
(start - end)
294 (101 - 394)322 (76 - 397)
definitionCHROMAT_FILE: MSMg01no091_h18.b1 PHD_FILE: MSMg01no091_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:01 2005CHROMAT_FILE: MSMg01no091_h18.g1 PHD_FILE: MSMg01no091_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATTCATTTTATNNATTACCTTCATTTCATTNNATCANTCTAANATAA
AATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATGCATATTTACCTTTCAGAACAATTCCAAGTCATAAAC
TTGCATTTATCACCCTGTAACTTCTCCATGCCGCCTTGGTTTATTGTATA
GGTAGCTGAGAGAGTGGCCTAAGCCTTGCCATGAGAGATCCTTAGCTTTT
TGAGGCAATAGAAGTGCTATGTCATAAGCAGCAGGGAGGATTTTTTTTTT
AAATTTGAATTTGCTTATGTACAGGTGAATTTTCATATATTGAACCATCC
CTGCATCCCTGGAATGAAGTCTACTTGATCATGGTGAATGATAGTTTTGA
TACGCTTTTGGATATGGTTTTTGAATATCTTATTAGATATTTTCTTACTT
TACATTTCAAATGCTATCCACAACGTCCCCTATATCCTCTCTCAGACCTG
TTCCCCTTTCCACCCACTCCTGCTTCCTGGCTCTGTTTTTCCCCTGTACT
GCTCCATATCATCTTTACAATATCACGGGCTTCTCCTTTCATCGTTGTCC
ATCTATCTACTTCTCTGCTCTTCATGCTCTTTCCCCCCCCTACTTGCTTC
TTTCTGTTTACCTTAAAATTTTTGACCTTTCTTTATCTCTTGCCCACCCT
TTACTCTTCATTACTCTCTTTCCTACTCCCTCTATCGTTCCTACCGTGCC
TTCCTTTATAACCGCTCCCTCCATCCTTACTTTTCTTCCATCCCCGAATC
CTCT
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTG
AGAAACACCTGAAAAAATGTTCAGCACCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACAACAGTCAGAATGGCTAACAT
CAAAATTTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
GACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTGCAACAACTCCGGAAA
TCATTCTGGTGATTCCTTCGAAAATTGTACATGGTACTACCGGAGGATCC
CGCAATACCTCTCCTGGGCATATATCCAGAAGAAGTTCCAACTAGTAAGA
AAGAAACATGCTCCACTATGTTTATAGCAGTCTTATTTATAATAGTCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGACGAATGGATGTAGAAAAT
GTGCTACATTTACACAATGGAATACTACTCAGCTATTAAAAAGAACGAAT
TTTATGATATTCCTAGGTAAATGGTTTGGACCTGGAGGGCATTCTCCTGA
CTGAGGCAACCATCCCCCAATCACCCATATGATACGTACTCCCTGATCAC
TGGATATTAGCCCAGAAATTTCAAATACCCCAAATTTACCTTCCCATTTC
GCCAAACCCCTGATATTGCATAAACAATACATACCCATGTGTGGTCCCCT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_h18.b1 MSMg01no091_h18.b1 CHROMAT_FILE:
MSMg01no091_h18.b1 PHD_FILE: MSMg01no091_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:01 2005
         (294 letters)



>mm_chr18_30218977_30219670
          Length = 694

 Score =  516 bits (267), Expect = e-151
 Identities = 285/291 (97%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatgcatatttacctttcagaacaattccaagtcataaacttgcatttatcac 63
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggaattccatgcatatttagttttcagaacaattccaagtcataaacttgcatttatcac 329

                                                                       
Query: 64  cctgtaacttctccatgccgccttggtttattgtataggtagctgagagagtggcctaag 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cctgtaacttctccatgcagccttggtttattgtataggtagctgagagagtggcctaag 269

                                                                       
Query: 124 ccttgccatgagagatccttagctttttgaggcaatagaagtgctatgtcataagcagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccttgccatgagagatccttagctttttgaggcaatagaagtgctatgtcataagcagca 209

                                                                       
Query: 184 gggaggattttttttttaaatttgaatttgcttatgtacaggtgaattttcatatattga 243
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 208 gggaggattttttttt-aaatttgaatttgcttatgtagaggtgaattttcatatattga 150

                                                              
Query: 244 accatccctgcatccctggaatgaagtctacttgatcatggtgaatgatag 294
           |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 149 accatccctgcatccctggaatgaagcctacttgatcatggtgaatgatag 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)