BAC Information

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BAC

Clone NameMSMg01-092B03
Chromosome18 (Build37)
Map Location 40,467,679 - 40,467,849
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092B03.T7 (MSMg01no092_b03.b1)MSMg01-092B03.TJ (MSMg01no092_b03.g1)
ACCAG309848AG309849
length754739
length of high quality
(start - end)
209 (133 - 341)---
definitionCHROMAT_FILE: MSMg01no092_b03.b1 PHD_FILE: MSMg01no092_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:47 2005CHROMAT_FILE: MSMg01no092_b03.g1 PHD_FILE: MSMg01no092_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTTTACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTGAACTTTTCTCCTTTCAGGTCCACATTTGCTCTGG
CTCTGGCAACTGACTGAACCAAACAATTACCCTCATACCTAGAACTTTGG
AAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAAGGCTCCA
CTCACTAGTACACTTTCACTAGAAGCCTCGCCCTGTCAGCAGTTTAGGAA
TTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTC
ATGCTCAATTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTCCTCTGTAT
AGCCCCGCCCTGCTCTGGACACCTTTCTCTCCATCCCCCTGCCCCTCCCT
CTCCTAATTTTCCTGTTTCTGCCTCTTCCATATCTTCTAATTATACCTTT
TTCCCTATTCCCCTTATACCCTTTCTACCCCCGCTTTATTCCCCCCCCTT
TTTCCCTCATTCCTTTTACTTCCGTGTACCGCCTTTAAATACTCGTCCCC
CTCTCTTTCTTATTTTCTTTATCTTTTCTTTCATTTAACTTCTGATCTCT
CCCTCTTCTTTTATTCTCTTTGTTCCCTTCCTCTCTACCCCCCCTGTTTC
TCTCTTTCTCCGCACTACATATCCCTCTTCCTCTCTTCCCCACCCTATTC
TCCTTCCCCCTTATTTTCCCTACCTTTCCCCACCCCCCCCTCCTTTATTC
CTTC
TTCAATGATAGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCTTCAAATGATAGGAAGAGCCGAC
ATCGAAGGATCAAAAATTTACCCCCCTATGAACGCTTGGCCGCCACAAGT
CAGTTATCCCCGTGGTAACTTTTCCGACACCTCCTGCTTATAACCCACTA
GGCCTTAAGTATTGTGAGGCCCCGCTTTCTCGCTCTGTATTCGTTACTGA
TTCTCTCCACCACTCGAGCTTTTGTCCTTCTGCTCCTCTGGTCTGCCCCC
CTGCCCTCCCCGATCTCTTCTCTTTTTTTCCTGCCCTTCTGTTTTGACTC
GTGTATCTTCTTTTTTTTATTTTTCCCCTCCCCTTGTTCCCGCAACTTTT
CTCCCTTTCTCTCTTTCTCTTCTCCTCTACTCTTTAATAAACATAATCCC
CCCTTTCTTTTCGCTCCCCTCCCTCCTCCTCTTTTCTCCTCTTCTCCCTA
TCCTAATACTAATTTCCGCTTTATTCCATCCACTACAATTCTACACACTT
ATTCTTCCCCATTTTTCTCCCCTCTTATTTTTATTTTCACTCACACCTTA
TTTTAATAATTAATCTCATATTATCCAATCTACCCATCTCTCTTTTACTC
CATTATATACCTCTCACCACCTCCCTTTACCCCCCCATCCCATCCCTCTT
AACACTCCCCCTCCCTTGTACTTCACAACATCCTTAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_b03.b1 MSMg01no092_b03.b1 CHROMAT_FILE:
MSMg01no092_b03.b1 PHD_FILE: MSMg01no092_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:47 2005
         (209 letters)



>mm_chr18_40467479_40468087
          Length = 609

 Score =  253 bits (131), Expect = 4e-72
 Identities = 161/171 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatacctagaactttggaaatggtaatggagttgataacacaccctaacagaaagagga 60
           ||||||||||| ||| | |||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 371 tcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaacagaaagagga 312

                                                                       
Query: 61  aggctccactcactagtacactttcactagaagcctcgccctgtcagcagtttaggaatt 120
           |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 311 aggctccactcactagaagactttcactagaagcctcgccctgccagcagtttaggaatt 252

                                                              
Query: 121 tgtaaagccaatctggacaatatttaaatggtttggaatttctacttcatg 171
           |||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 251 tgtaaagccaatctggacaatatttacatgatttggaatttctacttcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)