Query= MSMg01no092_d16.b1 MSMg01no092_d16.b1 CHROMAT_FILE:
MSMg01no092_d16.b1 PHD_FILE: MSMg01no092_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:01 2005
(524 letters)
>mm_chr18_59604009_59604931
Length = 923
Score = 491 bits (254), Expect = e-143
Identities = 278/286 (97%), Gaps = 1/286 (0%)
Strand = Plus / Minus
Query: 239 tttttgccctaatccaaatatttaagattgatggagccttagaggatctatttgactgga 298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 397 tttttgccctaatccaaatatttaagattgatggagccttagacgatctatttgattgga 338
Query: 299 tatgcagtgaaatacatcaaacatggatgcagaaacatggaggaacccactaaaggtcaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 337 tatgcagtgaaatacatcaaacatggatgcagaaacatggaggaacccactaatggtcaa 278
Query: 359 cgtaggtccataatatcatagtaagagagaattttgatttgggctcacatttttcaacta 418
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 277 cgtaggtccataatgtcatagtaagagagaattgtgatttgagctcacatttttcaacta 218
Query: 419 ttacaatttataaattgtagagagtgtatttagcttacatcatgatgttgggtctaaata 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttacaatttataaattgtagagagtgtatttagcttacatcatgatgttgggtctaaata 158
Query: 479 caaaatttgaaatttcagctcttagtgttttttttttatcatacca 524
|||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 157 caaattttgaaatttcagctcttagtg-tttttttttatcatacca 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 923
Length adjustment: 10
Effective length of query: 514
Effective length of database: 913
Effective search space: 469282
Effective search space used: 469282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_d16.g1 MSMg01no092_d16.g1 CHROMAT_FILE:
MSMg01no092_d16.g1 PHD_FILE: MSMg01no092_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:01 2005
(559 letters)
>mm_chr18_59474067_59475027
Length = 961
Score = 965 bits (499), Expect = 0.0
Identities = 545/561 (97%), Gaps = 4/561 (0%)
Strand = Plus / Plus
Query: 2 attaaaaccccccaaaactttagaacagattgacgaccttttacccctgtgttctataaa 61
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 202 attaaaaccccccaaaactttagaacagattgacgaccttttactcatgtgttctataaa 261
Query: 62 aagaactttgaatgaaga-tagcgacttactgataattgcatggaattcatagcttttca 120
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagaactctgaatgaagaatagcgacttactgataattgcatggaattcatagcttttca 321
Query: 121 aaagcaggcattctatatagaagatttatataagggagtctctataatgacaagtttgat 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 322 aaagcaggcattctatatagaagatttatataagggagtctcgataatgacaagtttgag 381
Query: 181 aaaaaaagtttctacttttttcttacagtcaagaaattcaagtcacagcatgtaattcat 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaaaaa-gtttctacttttttcttacagtcaagaaattcaagtcacagcatgtaattcat 440
Query: 241 ttcaaatgatgtatttgaactaataatatattttttcttagtgctttatcatgctttccc 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaaatgatgtatttgaactaataaaatattttttcttagtgctttatcatgctttccc 500
Query: 301 ttattgttataaaagcttatctgtataaattccattagtgctaatcccttggtttgaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ttattgttataaaagcttatctgtataaattccattagtgctaatcccttggcttgaaaa 560
Query: 361 aaaa--tcaatgagggagttacagagatggctaagtcagtaaagcaaagtgaataaggcc 418
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 561 aaaaaatcaatgagggagttacagagatggctaaatcagtaaagcaaagtgaatgcggcc 620
Query: 419 caagtatgacctcttgagtgtaaatctccatcccttacgtaaaagcctagagaggcagct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagtatgacctcttgagtgtaaatctccatcccttacgtaaaagcctagagaggcagct 680
Query: 479 agcctataatcctatcagtgaaggagcaagaggtgggaggcagctccccgaggcttgctg 538
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 681 agcctataatcctatcagtgaagaagcaagaggtgggaggcagctccctgaggcttgctg 740
Query: 539 cccagctaactagctgaatca 559
|||||||||||||||||||||
Sbjct: 741 cccagctaactagctgaatca 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 961
Length adjustment: 10
Effective length of query: 549
Effective length of database: 951
Effective search space: 522099
Effective search space used: 522099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
