BAC Information

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BAC

Clone NameMSMg01-094A23
Chromosome18 (Build37)
Map Location 17,249,619 - 17,249,929
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040202, Ppia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
Downstream gene4921533I20Rik, LOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094A23.T7 (MSMg01no094_a23.b1)MSMg01-094A23.TJ (MSMg01no094_a23.g1)
ACCAG311336AG311337
length688699
length of high quality
(start - end)
314 (43 - 356)612 (73 - 684)
definitionCHROMAT_FILE: MSMg01no094_a23.b1 PHD_FILE: MSMg01no094_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:33 2005CHROMAT_FILE: MSMg01no094_a23.g1 PHD_FILE: MSMg01no094_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAGACCTATACAGATGTTGAAATTTGTTCATTACTGAACCAGGGGTTG
GAAACTAGGTCACATTAACCGAATGCATTGTGCAAAGTATCCATGTAACA
GAAAAGGCTGAGGACGGAGATGGTATCATTCCTCTCTGCTGAGCAAGGAT
GAAGTGCCAGTCCTGGTGTCAACCTTTGACTGACTACTAATAAAGAAACA
CTCCTCCCTTCAAGCTACAATGAAAAAAAAAAAAGAAGAAGAAGAAGAAG
GCTGACTTTTATCACAGATCTGCAGTTGGAAAAACCACTTTTCTCAGCAG
TGCCACAGGTTTCTTCCGAGTCCGCACACACAAAAAAAAAAAAAAAAAAA
ATCCAGCTACCTATGCTTCTCTTAATCACTATTACATCAGGAGAGACCTA
AGAGAACTGAATCATTTCTTCCATTTCTAGTAAAGGCCACAGTTGTCCCT
TCATCACTGTTATTATAGACCAAAAATGGAACCTGGACATCTATCCTTAT
ATATCAATATCCCCCAAATAACAGCCTAAACCCGTAGATGCCTAGATCCT
TGTGCCAGAACAGAGTCAATCAGCACAAAATCTGAAAAAAATGACCAACA
ATAACAAAATTTCATCCTCAAAACAAACAAAAACCCAC
AATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATATATTGAACCACCTCTGCATCAGT
GGCATGAAGAATGCTTTTTTATGCTGAATGATTTTCTTGATGTGTTCTTG
TATTGGTTTGCAAGAATTTTATGTTGAATTTTTGCCTTGATATTCATAAG
GGAAATTGGACTGAACTTCTCTTTCTTCTCTTTCTTTGTTGGGTCTTTGT
GTTGTTTAAGTATCAGGGTAACTGTGGCCTCATAGAATAAATTAGGTAGT
GTTTCTTTTGTGGAATAGTTTGTGGAGTATCGGTTTTAGCTCTTCTTTGA
AAGTCTTGTAGGATTCTGCACTAAATCCATCTGACCCTGGGCTTTTATAT
TTGGTTGGGAGACTTTGGTGACTGCTTCTTTTTCCCTATGGTACTGTTAA
GTAGTTTACCTGATTTTGATTTAACTTTGATATATGCTATATGTCTAGAT
ATTCAGCCATTCCATTCAGATTTTCCATATTTGTTCAATACAAATTATTT
TTGGATTTCCTCAGTTTCTGTTGTTTGGGGGTGAAGAGTTCTATAGGTAT
CTGTTAAGTCCATTTGGTTCATAACATCTGTTAGTTTCATTATTTCTCTG
TTTAGTTACTGTTTAATGACCTTTCTTTGCTGGGAGTTGAGTCATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_a23.b1 MSMg01no094_a23.b1 CHROMAT_FILE:
MSMg01no094_a23.b1 PHD_FILE: MSMg01no094_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:33 2005
         (314 letters)



>mm_chr18_17249499_17250212
          Length = 714

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctagacctatacagatgttgaaatttgttcattactgaaccaggggttggaaac 63
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 431 ggaattctagaactatacagatgttgaaatttgttcattactgaaccaggggctggaaac 372

                                                                       
Query: 64  taggtcacattaaccgaatgcattgtgcaaagtatccatgtaacagaaaaggctgaggac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taggtcacattaaccgaatgcattgtgcaaagtatccatgtaacagaaaaggctgaggac 312

                                                                       
Query: 124 ggagatggtatcattcctctctgctgagcaaggatgaagtgccagtcctggtgtcaacct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 311 ggagatggtatcattcctctctgctgagcaaggatgaagtgccagtcctggtgtcaatct 252

                                                                       
Query: 184 ttgactgactactaataaagaaacactcctcccttcaagctacaatgaaaaaaaaaaaag 243
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 251 ttgactgactactaataaagaaacactcctcccttcatgctacaatgaaaaaaaaaaaag 192

                                                                       
Query: 244 aagaagaagaagaaggctgacttttatcacagatctgcagttggaaaaaccacttttctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aagaagaagaagaaggctgacttttatcacagatctgcagttggaaaaaccacttttctc 132

                      
Query: 304 agcagtgccac 314
           |||||||||||
Sbjct: 131 agcagtgccac 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)