BAC Information

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BAC

Clone NameMSMg01-094E10
Chromosome18 (Build37)
Map Location 14,571,950 - 14,572,241
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040358, Zfp521, LOC100040094, LOC100040103, LOC100040391
Downstream geneLOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094E10.T7 (MSMg01no094_e10.b1)MSMg01-094E10.TJ (MSMg01no094_e10.g1)
ACCAG311491AG311492
length671767
length of high quality
(start - end)
293 (45 - 337)292 (181 - 472)
definitionCHROMAT_FILE: MSMg01no094_e10.b1 PHD_FILE: MSMg01no094_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:51 2005CHROMAT_FILE: MSMg01no094_e10.g1 PHD_FILE: MSMg01no094_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTATGTCGAGAGGATCCGCGGAATTCATAAATGTACCTCAAGAACCT
CAGACGCTTCTGCAAGGTAAAAGACACAGCCAATAGGACAAATCGACCCT
CTACAGCTTGGGAAAAAAATCTTCACTAACTCCACATCTGATAGTGGGAT
AATATCTAAAATATATAAAGACTCAAGAAGTTAACATCCAAAAAAACAAC
AAAAAAACACCCCAAAAAACAAACAACCCAATAAAAAATGTTGTATAGAA
CTAAACAGAGAATTCACAACAGAGGAATCTTGAATGGCTGAGAAGCACCT
AAAGAAATGTTCAAAGTTCTTAGTCATCAAGGGAAATTTTATCACACCCA
CTCTGACATTCTCCCTTACACCAATCAGAATGGCTAAGATCAAAAACTTA
AAAAACAGCCTATGTTGGAAAGAATGTAGAGGAAGAGGAACACTTCTCCA
TTACTGGTGGGGTTGCAAACTGGTACAACCACTCTGGAAATCAATCTGGA
GATTCCTCAGAAAATTGGAAATAGATCTACCTGAAGACCCTGATATACCA
CTCTTGGACATATAGCCAAATGATGCCTCACCATGCCACAAGGGCACATG
CTCCACTATGTTCATACAGTTCTAATTGGTGATAACCAGAGCTGGAAAGA
ACCCAGATGTCCCACAACAGG
TTTNTTTTTTTNCNNTTTCTTTTTTCTTTTCTCNCCCNNNCCCNCTCCAT
CCACNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAGCTTGGGCTAG
AGTGGTGCCTTGTCTGAAAGGAAACCAGCCAGCTGGAGAGACAGCTCAGC
TGTTCAGAGAATTTCCTGTTCTTCGAAAGGATCCGAGTTCTGTTCCCCAC
ACCCTTGTCAGCGGCTAACCTTTAACTTCCGTCCCAGGGACCCAACGTCT
TCTGGCATCTGTCAGTGCCTGCATACACTCACACAGACATTCATATGTAG
ACATAAATAAAAATAAAAATAATTCTTGTTCTTAAAGCAAATCAGAAGAG
GAAGTAAGGAAGGTAAATAGGAAATTCTAAATATTGATGCAATTTGGGCA
TATTCTAAATTGTAACACAAATATAAAATACAGATAAAGTCTTGTCTTAC
ACTCTGAAAGGAAACATGCTAGGGGAATTCACAAATCAAAGCCTGTTCCC
TTTCCGCCTTCAAGGAGACCATACTCACCAATTAGACGTTTTTACACTTC
ATCAACCTCAGAAACTTCTCGTGGCTATAACCCCTTTATTTTGCTTCTAA
GTCCTAACTTGGTGCTCATTTCCTGAGCTCTGGCCCTGGATATCTCACAT
CATTTCATGTGCTTTTCCCAGGAGGACTCTAATATCTGCTCTTACAATGA
TGGCTTGCTTACCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_e10.g1 MSMg01no094_e10.g1 CHROMAT_FILE:
MSMg01no094_e10.g1 PHD_FILE: MSMg01no094_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:51 2005
         (292 letters)



>mm_chr18_14571750_14572441
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctggagagacagctcagctgttcagagaatttcctgttcttcgaaaggatccgagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctggagagacagctcagctgttcagagaatttcctgttcttcgaaaggatccgagttc 260

                                                                       
Query: 61  tgttccccacacccttgtcagcggctaacctttaacttccgtcccagggacccaacgtct 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tgttccccacacccttgtcagcggctaacctttaacttcagtcccagggacccaacgtct 320

                                                                       
Query: 121 tctggcatctgtcagtgcctgcatacactcacacagacattcatatgtagacataaataa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggcatctatcagtgcctgcatacactcacacagacattcatatgtagacataaataa 380

                                                                       
Query: 181 aaataaaaataattcttgttcttaaagcaaatcagaagaggaagtaaggaaggtaaatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataaaaataattcttgttcttaaagcaaatcagaagaggaagtaaggaaggtaaatag 440

                                                               
Query: 241 gaaattctaaatattgatgcaatttgggcatattctaaattgtaacacaaat 292
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gaaattctaaatattgatgcaatttgggcatattctaaattctaacacaaat 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)