Query= MSMg01no094_j03.b1 MSMg01no094_j03.b1 CHROMAT_FILE:
MSMg01no094_j03.b1 PHD_FILE: MSMg01no094_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:17 2005
(387 letters)
>mm_chr18_28183707_28184494
Length = 788
Score = 704 bits (364), Expect = 0.0
Identities = 382/388 (98%), Gaps = 1/388 (0%)
Strand = Plus / Plus
Query: 1 aattttgttttattttagctcaaaaaatctttcgctttct-aaaattatacaatcattat 59
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 201 aattttgttttattttagctcaaaaaatctttcgctttctaaaaattatataatcattat 260
Query: 60 tcaaaggaattctttcttgtttcctgattgtgaaatctaaactagtaatgattatctttt 119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaggaattctttcttgtttcctcattgtgaaatctaaactagtaatgattatctttt 320
Query: 120 caaactatttcatttcttctttgtgaaaaattgagaatctggaattcctaaaatatttag 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaactatttcatttcttctttgtgaaaaattgagaatctggaattcctaaaatatttag 380
Query: 180 ttgtaaagactctgtattcctgacatctggtttgtgaggtgcagaggctaggacagcact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtaaagactctgtattcctgacatctggtttgtgaggtgcagaggctaggacagcact 440
Query: 240 aactgccataagaaagcatccctgggcggtgtaccttttgatacaacctacagaagtcct 299
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 441 aactgccataagaaagcatccctgggtggtgtgccttttgatacaacctacagaagtcct 500
Query: 300 tgaatgtgggtacagaaagtagtgtagctgtgggcactatttgaagaatgtcttaagttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaatgtgggtacagaaagtagtgtagctgtgggcactatttgaagaatgtcttaagttg 560
Query: 360 ttttgacctttatcccatagtatttagt 387
||||||||||||||||||||||||||||
Sbjct: 561 ttttgacctttatcccatagtatttagt 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 788
Length adjustment: 9
Effective length of query: 378
Effective length of database: 779
Effective search space: 294462
Effective search space used: 294462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_j03.g1 MSMg01no094_j03.g1 CHROMAT_FILE:
MSMg01no094_j03.g1 PHD_FILE: MSMg01no094_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:17 2005
(513 letters)
>mm_chr18_28283338_28284250
Length = 913
Score = 770 bits (398), Expect = 0.0
Identities = 451/482 (93%), Gaps = 24/482 (4%)
Strand = Plus / Minus
Query: 1 tttccttcttgaaaagagtagaggctttatgtttttatgattttccaaaattattcttgt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 458 tttccttcttgaaaagagtagacgctttatgtttttatgattttccaaaattattcttgt 399
Query: 61 ccaggaaaaattcctttgaaatagcggtatatattgtttcctgtctaatgcatctcattt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ccaggaaaaattcctttggaatagcggtatatattgtttcctgtctaatgcatctcattt 339
Query: 121 tctgtcactattcctctcttactgaattaggcattaaatttcattacatttcagaattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctgtcactattcctctcttactgaattaggcattaaatttcattacatttcagaattct 279
Query: 181 accttttcccataaaatctctaattttctaattgaagataaaatcactttccataactgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 accttttcccataaaatctctaattttctaattgaagataaaatcactttccataactgt 219
Query: 241 agcaacaactacaggtataaagagagaaagagagaaaaaaacaaaaaaaaaaaaaccaaa 300
|||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 218 agcaacaactacaggtat--------aaagagagaaaaaaac--------aaaaac---- 179
Query: 301 aatatggggaatgttttttaatgatgctgctacttgggacataaccaaataccatgtgtt 360
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 178 ---atggggaatgttttttaatgatgctgctacttgagacataaccaaataccatgtgtt 122
Query: 361 ggagagtacatttcattatatctaaagtatagtcccacatttttatttacaagaaaatat 420
||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||
Sbjct: 121 ggagagtacatttcattatatctaaggtagaattccacatttttatttacaagaaaatat 62
Query: 421 attaatttcttatgggcacattgtacataggtagtaaaaaattatgtgggtatttaagaa 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 attaatttcttatgggcacattgtacataggtagt-aaaaattatgtgggtatttaagaa 3
Query: 481 gt 482
||
Sbjct: 2 gt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
