BAC Information

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BAC

Clone NameMSMg01-094N16
Chromosome18 (Build37)
Map Location 81,135,700 - 81,136,283
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b
Downstream geneSall3, LOC665124, LOC100039458, LOC100040871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094N16.T7 (MSMg01no094_n16.b1)MSMg01-094N16.TJ (MSMg01no094_n16.g1)
ACCAG311911AG311912
length638704
length of high quality
(start - end)
59 (83 - 141)586 (68 - 653)
definitionCHROMAT_FILE: MSMg01no094_n16.b1 PHD_FILE: MSMg01no094_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:40 2005CHROMAT_FILE: MSMg01no094_n16.g1 PHD_FILE: MSMg01no094_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATCCGCGGAATTCTAATGACCTGCATTTAGCAGTAGTGTGTAGGGACA
CGGAGGACGTGATCAAGGAGGTCCCCTTCCTGCCGTTAGCTCTAATTTCC
TGATTATGACACCTTCTCTCCTCATACGACGCATAATCTATCAAATGATA
TGCTTTTACAATTACTGTACATGCAGAATGGTGTGACCAACTGGAAGTTG
AATATTGCTATGTTATTATGATCAGCATTATTATTACTTGAGTATCACTA
ACGTACTTGATCCTGAGATCACATGATTACATTCCGTGAGATATACCTTA
ATTTAACCATACTTATTATTCTTCTCCACCCCCCCCCCCTCGATAATTTG
ATTATCCTCTACGGTTAAACTTCCCCCAAAAACAAACAGCAGCTGCTTGC
TAGTTCCAATTTCACGTTTATACCCAATAACTATTTACTATTTCCTATTA
TCTCTTCCCTGTTCTTCTTGTGTAACACCCCTTTATATTCAAATTATCTC
CCTATTACCCTTATTTCTCTTCAACCACACCCGCCCTCATACTATCCCTT
CTTCTTCTCTCTTCCCTCCTTTCCCACTACCCCTCTCAGCTTCATTCGCT
ATCTTTTTTAATTCCCTTTATTTCCTCTCTCTTTCACC
GATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACAGACGAAGAAGACCAATATCCAGCTCTCGT
AGACAGAGTGAATTCAGCCTTCCTTGGCCTTTTGGTTTTAGGTATGCACT
GGTGTATCAGATGATGCCCACCCCCCACATTGGAGAAGGCCATCTGCTTG
ACTCATCCACTGAGTTAAATACTTGTCTTCTCCAGAGGCAACTTCAGAAA
AGGAGAAGTAATGTTTGCCAGATATCTGTGCATATTAGTCACAGTAAAGA
CTCAAAATATGTGAGCAAAATAAATAAATAAATAAATAAATAAATAAATA
AATAAATAAATAAAACCTAGGAGAAGGACTTATTTTGGCTCACAGTGGCA
GAGATTCAGCTCATCATAACAGTGAGGAAGCAGAGGAACAAACTCACATC
CCGGTAGACAGGATGCAAAAAGAGAGAAAATGGCTTTATTAAGAGGATAT
CTCCTCCCTTTTCCCTTTGATTTCACCAGGGACCCCCTACCTAGACAATC
CTGGCATCCACATTCAAAGCATCTAGTTAACCGTCTCTAGAAAAGCCCTC
AAGGGTCCATCCATGTACACGTGTGATTTATTTATCGCTCAGGCTCCCCT
CTATCCAATCAAGTTGGCCATCTAAAGTAACCACCACACTGAGCCTCCCC
TGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_n16.g1 MSMg01no094_n16.g1 CHROMAT_FILE:
MSMg01no094_n16.g1 PHD_FILE: MSMg01no094_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:40 2005
         (586 letters)



>mm_chr18_81135500_81136485
          Length = 986

 Score = 1083 bits (560), Expect = 0.0
 Identities = 578/584 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagacgaagaagaccaatatccagctctcgtagacagagtgaattcagccttccttgg 60
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cacagacgaagacgaccaatatccagctctcatagacagagtgaattcagccttccttgg 260

                                                                       
Query: 61  ccttttggttttaggtatgcactggtgtatcagatgatgcccaccccccacattggagaa 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ccttttggttttaggtatgcactggtgtctcagatgatgcccaccccccacattggagaa 320

                                                                       
Query: 121 ggccatctgcttgactcatccactgagttaaatacttgtcttctccagaggcaacttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccatctgcttgactcatccactgagttaaatacttgtcttctccagaggcaacttcag 380

                                                                       
Query: 181 aaaaggagaagtaatgtttgccagatatctgtgcatattagtcacagtaaagactcaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaggagaagtaatgtttgccagatatctgtgcatattagtcacagtaaagactcaaaa 440

                                                                       
Query: 241 tatgtgagcaaaataaataaataaataaataaataaataaataaataaataaataaaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgtgagcaaaataaataaataaataaataaataaataaataaataaataaataaaacc 500

                                                                       
Query: 301 taggagaaggacttattttggctcacagtggcagagattcagctcatcataacagtgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggagaaggacttattttggctcacagtggcagagattcagctcatcataacagtgagg 560

                                                                       
Query: 361 aagcagaggaacaaactcacatcccggtagacaggatgcaaaaagagagaaaatggcttt 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcagaggaacaaactcacatcccagtagacaggatgcaaaaagagagaaaatggcttt 620

                                                                       
Query: 421 attaagaggatatctcctcccttttccctttgatttcaccagggaccccctacctagaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attaagaggatatctcctcccttttccctttgatttcaccagggaccccctacctagaca 680

                                                                       
Query: 481 atcctggcatccacattcaaagcatctagttaaccgtctctagaaaagccctcaagggtc 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 atcctggcatccacattcaaagcatctagttaaccttctctagaaaagccctcaagggtc 740

                                                       
Query: 541 catccatgtacacgtgtgatttatttatcgctcaggctcccctc 584
           ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 catccatgtacacgtgtgatttattaatcgctcaggctcccctc 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)