BAC Information

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BAC

Clone NameMSMg01-095L21
Chromosome18 (Build37)
Map Location 47,652,280 - 47,652,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik
Downstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095L21.T7 (MSMg01no095_l21.b1)MSMg01-095L21.TJ (MSMg01no095_l21.g1)
ACCAG312584AG312585
length680811
length of high quality
(start - end)
319 (18 - 336)34 (178 - 211)
definitionCHROMAT_FILE: MSMg01no095_l21.b1 PHD_FILE: MSMg01no095_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:51 2005CHROMAT_FILE: MSMg01no095_l21.g1 PHD_FILE: MSMg01no095_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATCGAGAGATCCGCGGAATTCTCTTCCTCTCAAGACCGGCTCC
AGTGATCATTGCAGAACACCCTGTATACTTAGTTCAGCCTTTGCTCACAT
AAGGCGAGGATGTGGAGCTGTGTACAGGAGAGTTTGAGAAAGCTGTCTGT
GGTGTGGACAGTCCAATTTATAAGGTATGGATTGCTTCATCTTCCATCCA
GGCCAGTCACAAAGAGAGCATACAGACTCTGGCACCTTGGACCAAACCTG
TGGGCCTGAAGATTTCTGATTGAAAACTGTGCAGTCTCTTTTCCCTTAGT
CCTGAAAAAAATAAATAATATAATATAATATATATTTATAAAATAATACA
TAAATATATTATATAAATCCCCAGCTAGCTAGCTAGTACTTAGCACCGTT
TTTACTGGCAGAGTTCTCCTTGCAGGGCTCTGTGTTTATAGTAGGTACCT
AAGCACGCACACAGTTAAGGAGTAGAGACCATTCATGTTTCAGAGCAACT
TGTCTCTTTTATCCTGTAAAGGGCAAAACTGTAGGCTTGCTTTCTGTAAA
CCTTCCTGTTGACCCTGATACATATGCACCATGTGCCTTGGGGTAGAATC
CTCAAAGTGTTGTCTGAGGTCACGTGTAATCCTATTCAGCAATCCTTCAG
AGCTCAGTTCTTCTCCTTCAGAAAGAGATT
TTTTTTTTNNNNNNNNNNNNNCCTTTTNNNNNNNNNNNTNGCGGGCCCCT
NTCCCACGATGACATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTAGAAACACTGTGCTATAAAAT
GAGATTTGGCTCCACGGAGTTGCCACAAAACAATGGGCTCAATAGTACCC
GGCACTGGCTGCTGGGTGTATTCTAGCTCCTTTAGTCGGGGCCTTTCATT
CATGGGAGCAGGAGCCACACTATAAAATGAAGGGGAGGAGGGTGTCTTAC
TGCTGTGGAAATGCTGAGCGAAGGACGGCAGGAAAACCCCAACATACTTG
CATACCAGGGTCAGGACATACTATTTTCCCCACCCAACTGGACGCAGCTT
CAACAAAGACTATTTTTTCCCCCCCCCCCCCTGCCATGATTAGCACAATG
TATCCTCGTTTCAGGGACTGGCCTAACATAAAAAAAAATTTTAGATGGGG
GGGGGGAGAATATACCCAATCTTTTACCCTCTGAAATAAAGGGTGTCCCA
CGTTTGCCAGGGTTACCCTATCTCAAACGCGTTCCCCCCCCGCGGTCTGC
CATCCCCCCCTGCATCCTGTTAATAAGACCCCGCTTACCCCCCTACCGCC
CACTAAAATCTTGTCCCCCCCCTCCTGGGATTTTTTGAAACCAGAATTTT
CTCCCCCCCTCCCGCGCCTACCTTTACATACCCCTCTTATTTACCCCCAT
TAAATCCATTTCCGCAGTTTGTCCCCCCCACTCTGCCCTTTTTATCAACA
CATATTACCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_l21.b1 MSMg01no095_l21.b1 CHROMAT_FILE:
MSMg01no095_l21.b1 PHD_FILE: MSMg01no095_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:51 2005
         (319 letters)



>mm_chr18_47652105_47652826
          Length = 722

 Score =  540 bits (279), Expect = e-158
 Identities = 306/319 (95%), Gaps = 11/319 (3%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctcttcc-tctcaa-gaccggctccagtgatcattgcagaacaccctgtatactt 63
           ||||||||||||  || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaattctcttccagct-aaggaccggctccagtgatcattgcagaacaccctgtatactt 432

                                                                       
Query: 64  agttcagcctttg-----ctcacataaggcgaggatgtggagctgtgtacaggagagttt 118
           | |||||||||||     |||   ||||||||||||||||||||||||||||||||||||
Sbjct: 431 aattcagcctttgtataactc---taaggcgaggatgtggagctgtgtacaggagagttt 375

                                                                       
Query: 119 gagaaagctgtctgtggtgtggacagtccaatttataaggtatggattgcttcatcttcc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gagaaagctgtctgtggtgtggacagtccaatttataaggtatggattgcttcatcttcc 315

                                                                       
Query: 179 atccaggccagtcacaaagagagcatacagactctggcaccttggaccaaacctgtgggc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atccaggccagtcacaaagagagcatacagactctggcaccttggaccaaacctgtgggc 255

                                                                       
Query: 239 ctgaagatttctgattgaaaactgtgcagtctcttttcccttagtcctgaaaaaaataaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgaagatttctgattgaaaactgtgcagtctcttttcccttagtcctgaaaaaaataaa 195

                              
Query: 299 taatataatataatatata 317
           |||||||||||||||||||
Sbjct: 194 taatataatataatatata 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 722
Length adjustment: 9
Effective length of query: 310
Effective length of database: 713
Effective search space:   221030
Effective search space used:   221030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)