BAC Information

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BAC

Clone NameMSMg01-096F03
Chromosome18 (Build37)
Map Location 5,493,265 - 5,493,547
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
Downstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096F03.T7 (MSMg01no096_f03.b1)MSMg01-096F03.TJ (MSMg01no096_f03.g1)
ACCAG313025AG313026
length790849
length of high quality
(start - end)
283 (127 - 409)151 (131 - 281)
definitionCHROMAT_FILE: MSMg01no096_f03.b1 PHD_FILE: MSMg01no096_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:38 2005CHROMAT_FILE: MSMg01no096_f03.g1 PHD_FILE: MSMg01no096_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTATCTTTTTATTTTATTATATTNTTNATCTCCCACACCCACGAAAAC
AAAACCATCTATAATTGCGCCGCTAAACGACTCACTATATTCAGAAATCC
GCGGAATTCTTCCAGTTTTACTTAAACTCTTCCATGGGGACTTGCTCTTC
TTAAATGACACCAACCTGCAGCCACTTTCCACTGAGCATTCAGCCCAGCT
TTCTGTGTCACACAGGCAGGATGGCTTTATCATTGTCTGTCGTATTATTC
ACTTGGGACAGGGTCTCTCACTAAACATGGAGCTAGCTAGGCTAGAGGCC
ACCAAGCCTCATTGATCCTCCTGTCTCCAACTGGCAAGCAATAGATTTAT
AAGTATGTACACAGCCATGCTCACCTCCATCCCCACTCCAGCCTCGGTTT
TAACACAGGAGATTGGTATTCGAACTTACTTCTCTCATGCATAGAAAGAT
CTCCACTCCACTGAGTCATCTTCCACCTCTCCCTCCCAGCCTTTTCTATT
CTTTTAAATTCCTTGAGATATAAAATCTTGCGCATCATTCAGCAGGCACA
CTTACCTTAATTTTGAAGGAGGTTATACATCACTGCTTATTCATTATGTT
ACTAATCACTACTAATTATTCAACAGCTTGTACTCTGCTCTCACTATCTC
CTGCCTATGCTTTCGAAATGCCCTAATTCTTCGTATCAACGCTGTAAATA
ACCCTTGCGCCTATGCACCCACCCTCGTGTCTCTTAATTACAGATAATAC
TTTTCCCCCTATTTTCTGTCCTTCATTTCCTGTTTTGTAG
TTGTTTTTTGTTTGTTTTGTTTNTTTNNTCCTTCTCTTCCCCCCCGCACC
CNAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCATGTGGCTATCTTCT
TTCAGGTTTGTTGAAAGATGTTCTTGCTTTTTCTAGGGTATAGTTTCCCT
TCTTGTGTTGAAGTTTTCCCTACATTATCTTTTGAAGGGATAGATTGGTG
GAAAGATATTGTGTGAATTTGGTTTTGCCTGTATTACTTCGTCTTCTCTC
TCTCGTGTTCTGTGATTTTCTTTTTTTTTCTCTACTTTTTCTTATACTTT
CTTTCCTCTCTATCTATCAACTTTTTATCCGTTTTTTTTTCTTTTTGTCT
CTCGTTTTTTCTTTCGTGTTCCCCCTCCCTCTCTACTTCCTCCTTTTTTC
CCCCTTTTTCCTTCTCTTTTTTCTCGTCCGTTCTCGCCCCCCCCCTCCTC
CATTTTCTTTCCTTTCCCTTCGTTTCCTTCTTTTTCCCACTCTTTTCTCC
CTTCGTTTTTTTTTTTCCCGCCCCCTCTTTCTGTTTTTTTTTTTTCTCCG
TCTTCCCCTCTTCCCCCTTCTTCTCTTTCCTTTTTTTTTCCTTCGATAAT
GTTTTTCTTCCCCCGTCCTCCCGCTGCTGCTTGTGACTCTTCGCTTTTCT
ACTTTTCATCCTTATTGCTCTGTTTCTCTTCTCTGCTTCTTTTTCCTTTC
TTTCTCCCCTTTTTCCTTCTCTTCTTCCTCCTCCTCCTTCTTATCCCTTC
CCTCCCTTTTCCCCCTCTTTTTTCCTCCTTTTCTTTCTTTTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_f03.b1 MSMg01no096_f03.b1 CHROMAT_FILE:
MSMg01no096_f03.b1 PHD_FILE: MSMg01no096_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:38 2005
         (283 letters)



>mm_chr18_5493065_5493747
          Length = 683

 Score =  493 bits (255), Expect = e-144
 Identities = 276/283 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttccatggggacttgctcttcttaaatgacaccaacctgcagccactttccactgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 201 ctcttccatggggacttgctcttcttaaatgacaccaacctgcagccactttaaactgag 260

                                                                       
Query: 61  cattcagcccagctttctgtgtcacacaggcaggatggctttatcattgtctgtcgtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattcagcccagctttctgtgtcacacaggcaggatggctttatcattgtctgtcgtatt 320

                                                                       
Query: 121 attcacttgggacagggtctctcactaaacatggagctagctaggctagaggccaccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcacttgggacagggtctctcactaaacatggagctagctaggctagaggccaccaag 380

                                                                       
Query: 181 cctcattgatcctcctgtctccaactggcaagcaatagatttataagtatgtacacagcc 240
           |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cctcagcgatcctcctgtctccaactggcaagaaatagatttataagtatgtacacagcc 440

                                                      
Query: 241 atgctcacctccatccccactccagcctcggttttaacacagg 283
           |||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 441 atgctcacttccacccccactccagcctcggttttaacacagg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)