Query= MSMg01no096_n10.b1 MSMg01no096_n10.b1 CHROMAT_FILE:
MSMg01no096_n10.b1 PHD_FILE: MSMg01no096_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:21 2005
(377 letters)
>mm_chr18_28186834_28187610
Length = 777
Score = 667 bits (345), Expect = 0.0
Identities = 369/377 (97%)
Strand = Plus / Plus
Query: 1 cattgaatcagatagagagtgagatgagtaggttcagctatatgtgctctctaatgatta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 cattgaatcagatagagagtgagatgagtaggttcagctatatgtgctctctaatgttta 260
Query: 61 aaatatccttgaagtacctacaattatctttggatataagatttacaagagtcattcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatatccttgaagtacctacaattatctttggatataagatttacaagagtcattcttc 320
Query: 121 atttgatttttgatttttgaaataaatcatcaattagaagcaaggatatgtgtgttaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgatttttgatttttgaaataaatcatcaattagaagcaaggatatgtgtgttaaag 380
Query: 181 tctggggagatagagacaagtattatggatgaaacctaaccggcatgttcacagaatctt 240
||| ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 381 tctagggaggtagagacaagtattatggatgaaacctaaccgatatgttcacagggtctt 440
Query: 241 tgattttggacaaggtattttacatgctatgctttaatatgttcatatataaaaggggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattttggacaaggtattttacatgctatgctttaatatgttcatatataaaaggggat 500
Query: 301 agcacttacttaatgttaggagttgtgagaaataaatatattgatttaagccaaccactt 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 agcacttacttaatgttaggagttgtgaaaaataaatatattgatttaagccaaccactt 560
Query: 361 agggatgagatttgcag 377
|||||||||||||||||
Sbjct: 561 agggatgagatttgcag 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_n10.g1 MSMg01no096_n10.g1 CHROMAT_FILE:
MSMg01no096_n10.g1 PHD_FILE: MSMg01no096_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:21 2005
(495 letters)
>mm_chr18_28283335_28284230
Length = 896
Score = 770 bits (398), Expect = 0.0
Identities = 454/486 (93%), Gaps = 25/486 (5%)
Strand = Plus / Minus
Query: 4 ctttccttcttgaaaagagtagaggctttatgtttttatgattttcc-aaattattcttg 62
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 462 ctttccttcttgaaaagagtagacgctttatgtttttatgattttccaaaattattcttg 403
Query: 63 tccaggaaaaattcctttgaaatagcggtatatattgtttcctgtctaatgcatctcatt 122
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tccaggaaaaattcctttggaatagcggtatatattgtttcctgtctaatgcatctcatt 343
Query: 123 ttctgtcactattcctctcttactgaattaggcattaaatttcattacatttcagaattc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttctgtcactattcctctcttactgaattaggcattaaatttcattacatttcagaattc 283
Query: 183 taccttttcccataaaatctctaattttctaattgaagataaaatcactttccataactg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 taccttttcccataaaatctctaattttctaattgaagataaaatcactttccataactg 223
Query: 243 tagcaacaactacaggtataaagagagaaagagagaaaaaaacaaaaaaaaaaaaaccaa 302
||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 222 tagcaacaactacaggtat--------aaagagagaaaaaaac--------aaaaac--- 182
Query: 303 aaatatggggaatgttttttaatgatgctgctacttgggacataaccaaataccatgtgt 362
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 ----atggggaatgttttttaatgatgctgctacttgagacataaccaaataccatgtgt 126
Query: 363 tggagagtacatttcattatatctaaagtagagccccacatttttatttacaagaaaata 422
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 125 tggagagtacatttcattatatctaaggtagaattccacatttttatttacaagaaaata 66
Query: 423 tattaatttcttatgggcacattgtacataggtagtaaaaaattatgtgggtatttaaga 482
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 65 tattaatttcttatgggcacattgtacataggtagt-aaaaattatgtgggtatttaaga 7
Query: 483 agtttt 488
||||||
Sbjct: 6 agtttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space: 429710
Effective search space used: 429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
