BAC Information

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BAC

Clone NameMSMg01-097D17
Chromosome18 (Build37)
Map Location 3,601,406 - 3,601,667
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273
Downstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097D17.T7 (MSMg01no097_d17.b1)MSMg01-097D17.TJ (MSMg01no097_d17.g1)
ACCAG313716AG313717
length680693
length of high quality
(start - end)
91 (103 - 193)265 (77 - 341)
definitionCHROMAT_FILE: MSMg01no097_d17.b1 PHD_FILE: MSMg01no097_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:54 2005CHROMAT_FILE: MSMg01no097_d17.g1 PHD_FILE: MSMg01no097_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTATATTCAAAAATCCGCGGAATCTACATTGTTTCCAAAAAAANAAG
GAAAGAAAAAAGGAAACGTTCTTAATAACTAGTCTCAGCTGAGGCCCGTG
GAAGAGTGAGGAGGCCACATGATTACATAAAAACACAAACTCACAATTCA
TCCCTCAGGTTTTTTTTTCCCACTTTACTATGTTTAAATTCACTTCAGAC
GAATACTATAAAGCTGTTTTTAATTATTTTAATGAATTTTCACTGGTTCC
CCATGTTCTGACAGAGCTAAATTTCAAAAATAATTTTATTAGCTCTTTGA
GAATTCTGTACAATGAGTTTTGACCTTATTCAGATTTCTCCAACCCTAGC
CAGATGCAGCCTCCTTCCCCACACTCCCAACTTTGTGCCTTTTTTTTTAT
TTTAAAAATAACCCATTAAGACCAATTTGCACTGGCCTTCTAAAGGAGTG
TGGTTGGACTCACCAAGGTCCATGCTCTGAGAGGAAACTGACACCCCATC
TCCCAGAAGGAAATAATTGCCATCTGTTCCATAGCTTCCATAGGATGGAA
CCTTGCGGTGTGGTGCTTACAGGGGAGAAGTCCCCCCCCCCTTTTTTTCT
TTTCGACCAAAAACTAACTAATNTACCCTAACTTTCAATTTTTTCCTTCC
CTTTTTTTCTCTTTCTCTTTACTTTTCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCAAACTGGCATTCCTGGCCCTTCAAGAATGTGAGGTGGACAGGAATT
CTATTTCTTTAGGCTTGACATTCCTTGGACTTTTCACATGGAATGTTCTT
GGGGAAAGCACAGATCCTGAGACAACCCTTCCCTCACAGGCTCCCGGTCT
GCTGCAGTTTCTCTCCCGAGCTTCCTCTGGGTTCTTCTGTCAGGCACATA
CTACTCTAGTGTTTTAAGCTACAAAGGGGATGCAGGGTCTGGTTCATGTT
GTTTAGATTTCCAGCAGTATCCTGTGATCCCACTATTATCTGAGCTCACA
CCGCTAACAGAGACCTGAAAGGCTCATTACCAATTACCAATTCCCTGGGC
CATTCTGTTCCCTAGCGTACAACACCAATTACCCCCCTCCCTTTTCCTCA
AACCGCTTCCGATGCGATGCATTTGCTTTGCAAATTGGAAACATTCGAAC
AACTCCTACTTTACCTTCATGCTCTCAAGGCCAGGTTTGACATGTGTGAG
CTTCATCCTTCAGGAATAACCTTCAGGGCTCCCTTCTGGCGCTACCCTTG
GCAATATTGTCTTGATGACCCCCCGTTCTCCAAACCCGCCGAAACTACTT
GAAATTGCAAACGTTCCCTGGAATTCTCGCCCGCGGGGTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_d17.g1 MSMg01no097_d17.g1 CHROMAT_FILE:
MSMg01no097_d17.g1 PHD_FILE: MSMg01no097_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:54 2005
         (265 letters)



>mm_chr18_3601206_3601870
          Length = 665

 Score =  445 bits (230), Expect = e-129
 Identities = 254/262 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaatgtgaggtggacaggaattctatttctttaggcttgacattccttggacttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaatgtgaggtggacaggaattctatttctttaggcttgacattccttggacttttca 260

                                                                       
Query: 61  catggaatgttcttggggaaagcacagatcctgagacaacccttccctcacaggctcccg 120
           ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |
Sbjct: 261 catggaatgttcttggggaaagcacagatcctgagacaacccttagctcacaggctcctg 320

                                                                       
Query: 121 gtctgctgcagtttctctcccgagcttcctctgggttcttctgtcaggcacatactactc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgctgcagtttctatcccgagcttcctctgggttcttctgtcaggcacatactactc 380

                                                                       
Query: 181 tagtgttttaagctacaaaggggatgcagggtctggttcatgttgtttagatttccagca 240
           ||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||
Sbjct: 381 tagtgttttaagctacaaaggggatccagggtctggttcatgttgcagagatttccagca 440

                                 
Query: 241 gtatcctgtgatcccactatta 262
           ||||||||||||||||||||||
Sbjct: 441 gtatcctgtgatcccactatta 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)