BAC Information

Click to search

BAC

Clone NameMSMg01-097L23
Chromosome18 (Build37)
Map Location 64,271,532 - 64,271,705
singlet/doubletsinglet
Overlap genenone
Upstream gene9030411M15Rik, LOC627792, Txnl1, Wdr7, LOC629436
Downstream geneLOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097L23.T7 (MSMg01no097_l23.b1)MSMg01-097L23.TJ (MSMg01no097_l23.g1)
ACCAG314101AG314102
length758779
length of high quality
(start - end)
174 (132 - 305)---
definitionCHROMAT_FILE: MSMg01no097_l23.b1 PHD_FILE: MSMg01no097_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:36 2005CHROMAT_FILE: MSMg01no097_l23.g1 PHD_FILE: MSMg01no097_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCGAAAAAGAAAAACGGGCGACTTACGTCAGGTCAACTGACCCCCAATA
TGCTGCCGGAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACA
AGAGCGCGGAATTCCTCAGCTTTACCAAGGTCTTCTATTTGCACCTAAGG
TAAGGAAAGCTCTGTTTTGCTCCAGTGAGCACCGCTCTCTTTGGCATCAA
GCTGACATTCTGCTGTACATTTGACCTATTTCTCTCACACTCTAGCCAGT
TCTACCCACAGTATACAGTAAAGTTTATCAATACCAATTTGTGATGTACT
TCTGGGAGATTAGACAAGCAACCCAAGAAAATATATAGTTTGAAAAATCA
TTTTGAATGCATATAAGTATAAAAGATTATTTACTCACAAGTCACGAAGA
CCTTCAGGGTGAAATTGTACATATTATCGAATTTATCTACATTTTCAACT
GAAAATGTGAATTGCTGATACGCCAGCTCCAGAATGTGTTCCAACGCCAC
CCATCTCTTAATATTAGAGACCGGGTACAAAACAAGGCCCTTGATTTGTG
ACCAGCAGTTGCCGACTTGATTCTGGACAAGAGAATGCAACAGAGGTGAT
GATATACCACTTCCCACTTATGGATGTAAAATGAGTAACTTTTGGGGTCT
CACACGCTTTGAGGGAAGCTTGCAACAATGCGGGCCCTACGCTTACCAAA
AAAACGCGATGGGGAAAAAATATACGACACCCTATATTTGGCATGTCCAT
TTCAACCC
ACAACCACCCCACCCACCACCACCTACCCCACCCCCTTTTCCCCCCCTCC
ACCCCCCCCTGCATGAACTGCCTACCCTGGAGGCCGCCCGGTTTTCAAAA
TTACGCGACTTACACAAGGTTCCCCGAAATTCTGGCCTACCAGAGCAATA
AACTGAGACCATGTCCTCGAAATAAGCTAACACACACATAACAAGTCGGA
CATACCCATCACCTTACCCCTTGCGGTGTTTTTTTTTACCATTTATTTTT
CTCGCTAATAAAGCCACTTGCTATCCATCCTGAGACCACCCTGCCTGACA
AACACCAAACCTGCTGACCACGTTGAAGCCCCATCACCAACCACTGACAC
TTCACACTGGCCTCTCCTCTGCACCAAAATCTTTTATCAAATTGACCTCG
CCCCACCCACCACTGTATATTTCCATCTAATTTACCCAAATTTCCCCCCC
ACAGCCCGCTAGAGCTCCTAGCTCTGAACCACGTTACCGCGTTAAAAGAC
CACTTTGCCCCTCACCGTATGAACCACCTTTCTCCCCCCCCCTGTGCCAT
CGTCTGCCCCCTCTTTCCCGCTACATCTTCACTTCCTGAAAAACCCGCCC
AAAGAACGCCCGCCTTCCTGCACAGCCAACACCTTCCCCTCCTGGCATGT
CCTTTCACCCTCCTGGTTTCATTATTCCTACCCCCCCCCCCCCCCCCTCA
TATGCTTTCTATCCGAGGAAACACATCTTTGCCCAATTCCAGAACCCCCC
CCCCCCCACCACCCTTCCCCCTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_l23.b1 MSMg01no097_l23.b1 CHROMAT_FILE:
MSMg01no097_l23.b1 PHD_FILE: MSMg01no097_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:36 2005
         (174 letters)



>mm_chr18_64271332_64271905
          Length = 574

 Score =  306 bits (158), Expect = 6e-88
 Identities = 170/174 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctatttgcacctaaggtaaggaaagctctgttttgctccagtgagcaccgctctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 374 cttctatttgcacctaaggtaaggaaagctctgttttgctccagtgagcactgctttctt 315

                                                                       
Query: 61  tggcatcaagctgacattctgctgtacatttgacctatttctctcacactctagccagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tggcatcaagctgacattctgctgtacatttgacctatttctctcacactctagccagtt 255

                                                                 
Query: 121 ctacccacagtatacagtaaagtttatcaataccaatttgtgatgtacttctgg 174
           |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 254 ctacccacagtatagagtaaagtttatcaataccaatttgtgatatacttctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)