Query= MSMg01no097_n04.b1 MSMg01no097_n04.b1 CHROMAT_FILE:
MSMg01no097_n04.b1 PHD_FILE: MSMg01no097_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:42 2005
(496 letters)
>mm_chr18_81174467_81175363
Length = 897
Score = 915 bits (473), Expect = 0.0
Identities = 491/497 (98%), Gaps = 1/497 (0%)
Strand = Plus / Minus
Query: 1 gggatctgtgagtgagtaagacatctcgatgctctaaagagtcctttccttaagaaagtg 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gggatctgtgagtgagtaggacatctcgatgctctaaagagtcctttccttaagaaagtg 638
Query: 61 -accacgttcagttaaccctgatcatctgtcacttcagccaaagactgttttgtgactta 119
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tatcacgttcggttaaccctgatcatctgtcacttcagccaaagactgttttgtgactta 578
Query: 120 gaaacatttcaaatataggcaagcaagttcagtttcacagagggaacattagccctttat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gaaacatttcaaatataggcaagcaagttcagtttcacagagggaacattagccctttat 518
Query: 180 ttgtaattgtgtctatcctaataaatttctgcttacctccaacttttataaaggaggtcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttgtaattgtgtctatcctaataaatttctgcttacctccaacttttataaaggaggtcc 458
Query: 240 aattacattcatacttggaaggcacagctctaacttgagcatgtccgacactgaagagtc 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aattacattcagacttggaaggcacagctctaacttgagcatgtccgacactgaagagtc 398
Query: 300 agtgttcctggcatttttttttaaacagaccccagcagaaatgttaagtggtcattctaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agtgttcctggcatttttttttaaacagaccccagcagaaatgttaagtggtcattctaa 338
Query: 360 tttatttgccccagataagaaatgcaaatcatactgaagaactttccgcttactgactat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttatttgccccagataagaaatgcaaatcatactgaagaactttccgcttactgactat 278
Query: 420 agtttttaagatcactcgcttgccaaaagtgaaattcatgatgaagcttggctcactcat 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agtttttaagatcactcgtttgccaaaagtgaaattcatgatgaagcttggctcactcat 218
Query: 480 aagcaaattgttaccag 496
|||||||||||||||||
Sbjct: 217 aagcaaattgttaccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space: 431082
Effective search space used: 431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no097_n04.g1 MSMg01no097_n04.g1 CHROMAT_FILE:
MSMg01no097_n04.g1 PHD_FILE: MSMg01no097_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:42 2005
(245 letters)
>mm_chr18_81024592_81025236
Length = 645
Score = 431 bits (223), Expect = e-125
Identities = 238/243 (97%)
Strand = Plus / Plus
Query: 1 agggacaaaactgacatttgtactttagatatttctgtgtttgtaaagcaggtctcaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggacaaaactgacatttgtactttagatatttctgtgtttgtaaagcaggtctcaatt 260
Query: 61 atcatcagaatagcctctttcctgtttccctaaagtcctaagtccatgtgtgctcacagt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatcagaatagcctctttcctgcttccctaaagtcctaagtccatgtgtgctcacagt 320
Query: 121 gcagacacagctctgtgtggctgtgatatcaggatactggacacagtgacggtggcctaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagacacagctctgtggggctgtgatatcaggatactggacacagtgacggtggcctaa 380
Query: 181 gtaccagtgtggcccaagcagatgttcactatcttatccgtgtgctattagaaagcttca 240
|||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 381 gtaccagtgtagcccaagcagatgttcactatgttatctgtgtgctattagaaagcttca 440
Query: 241 cag 243
|||
Sbjct: 441 cag 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
