BAC Information

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BAC

Clone NameMSMg01-098C15
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098C15.T7 (MSMg01no098_c15.b1)MSMg01-098C15.TJ (MSMg01no098_c15.g1)
ACCAG314414AG314415
length700696
length of high quality
(start - end)
523 (36 - 558)451 (56 - 506)
definitionCHROMAT_FILE: MSMg01no098_c15.b1 PHD_FILE: MSMg01no098_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:11 2005CHROMAT_FILE: MSMg01no098_c15.g1 PHD_FILE: MSMg01no098_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:11 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCGT
TCCTGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAAC
GGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAG
TGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTAT
TGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGG
GACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCG
TTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCC
ATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCT
GTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCG
CAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGC
TTTGCAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGC
TGCCCGGCGGGTCATGGGAATAATGTCGCCGCATCGCCAGTCGGTATCGT
TTATGGTCGGAACTACCACGGTATCTGATCGTCTTCGAACCTCCGACCTT
CGTTCTTGATTAATGAAAACATTCTCTGCCCATGCTTTCGCTCTGGTCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCTCTGG
CAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAATGG
TAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACT
AGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTGTA
AAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTT
TTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCT
GGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGCGCGTGTG
TGTGTGTAATACTTCTCCTGTGATTGCCGTAACTTGCAATCTAGTGGGCT
TATGTTTGATTCCTGCAATCTTTTTTTCTAATTCTTTTTCCTTTTTATAT
TTTATCTTATTCTACTTTACTTTATTTTATTTCATTTTATTTTATTTTAT
TTCATTTTACCTCATTTTATTTTATTTTGGCTTCTCACAACGTGCTCCTT
TGCCTATTTCTCGTTCGTTTTCCTATCTTTCCCCCATTCTCCTCCCTCTT
TATCCCCTTTCCCCCCTCTCTTCCCCTTTTTCTTCTGCCCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_c15.g1 MSMg01no098_c15.g1 CHROMAT_FILE:
MSMg01no098_c15.g1 PHD_FILE: MSMg01no098_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:11 2005
         (451 letters)



>mm_chr18_40467476_40468325
          Length = 850

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 850
Length adjustment: 10
Effective length of query: 441
Effective length of database: 840
Effective search space:   370440
Effective search space used:   370440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)