BAC Information

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BAC

Clone NameMSMg01-098D16
Chromosome18 (Build37)
Map Location 13,900,818 - 14,060,319
singlet/doubletdoublet
Overlap geneZfp521
Upstream geneCabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379, LOC100040358
Downstream geneLOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D16.T7 (MSMg01no098_d16.b1)MSMg01-098D16.TJ (MSMg01no098_d16.g1)
ACCAG314464AG314465
length675779
length of high quality
(start - end)
237 (50 - 286)215 (204 - 418)
definitionCHROMAT_FILE: MSMg01no098_d16.b1 PHD_FILE: MSMg01no098_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:16 2005CHROMAT_FILE: MSMg01no098_d16.g1 PHD_FILE: MSMg01no098_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,060,083 - 14,060,319)(13,900,818 - 13,901,032)
sequence
TCTCTTCCAAGAGAGGATCCGCGGAATTCTAATTTCCAGTTCATCTTGGT
ATCTTTACTCATCCAAGTACTCTCTCTGTTACTGCAGATGCTTATAAACT
GCAGACAGCATGCCGTTCATGAATTTGGCTGATTTTCCATTGCTGCTATG
AAAATTGCAAACAAAATTGCTTTTCATTTTGCTTTGACAGGCAGTTTTAA
TTTTATTCATCATTTTACCAAACTGTATAACATTTCAGCTATATGCAGCT
TGTCTTTTGTCTTTTTCTGCACTATATTTATGCCGAATATATGAAAACAA
CCATAAAGAAGAGCCCAATAATATCAAGTTATAGTAAAAAGGGCTTATTA
ACAGGATATTTTCTGCCAGGGTAAAAAACTTCCTTGAACACATCATATAT
AGTATATAACGCGCACAACCGCACACTTTATTGCCTGCAGAAGTTGATTG
TGTAGCTGGCCACATTTTACAAATCTACAATAATAATCTCTCTGACCCAA
TTTTGAACCTATGTTTTGTTGACTCAGATCTTGCCACACCCCAATTATAT
AATGATTACCTGATGTCACCCGAAAGTCTCTTCACCCTCCCCAGATATTT
GTTCGTTTGAGTGATTTATTTTTGCAGCTTATGATTTATTTATCCTTTCC
CCCTCACCTCCCCTTTTTTCACCTC
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCNNNNNNCNA
TCATTTNNTNTATACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTCACCAAGGAATTCAACTTACCAA
ATTTACTTAATGTCTTTGTCATCCTGACCACACACCCTAGCATTCGATTT
ATCAATGTTAATGAAGCCAAGCCCTTAGGATTGGTGGTAAAAGGTCAAAT
GCTTACACAGGATCTCGGCATAATTCTGTGATTTTAGGTACCAAGGTGAC
TGGAGAACAATGGGTGCTGTGGTCTTCCCCAGAGTCACTGGGTACAATAA
GATTCATCTGCTAGGTATTTTAGGTACTCCTTTATGCATGAAAGGGCAGT
CTGAGGTGCCATTGGAAATAATTTGAAATCATCCTGCACTACGCAGCCAG
AGCTGCCAACATACTCTACAGCTCAAGTCAGAAAAGAGACTCCTTGGCAC
AATGTGCTACAAAGAAAAAAACAATTTTGGGGGGCTGTTGTGGGTGGCTG
AAACACACATCCTTTGTGTTCCCGGTATTCTCCTTCCATCACTTATTTTC
TGATTTCCCGTCTATTCTCTATTGTTCCCCATTTTCCCCCTTTCTTTTTT
TTTACTTTATCTGATCCATCTTATTTTTTCCTTTTTACTATTATCAAAAC
TTTTACTAAACCTTATAACCTCTCTGATAAATAACATTCATCCACTTAGG
TCTGCTCATTTTACCCTTTTGACCCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d16.b1 MSMg01no098_d16.b1 CHROMAT_FILE:
MSMg01no098_d16.b1 PHD_FILE: MSMg01no098_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:16 2005
         (237 letters)



>mm_chr18_14059883_14060519
          Length = 637

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctttactcatccaagtactctctctgttactgcagatgcttataaactgcagacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatctttactcatccaagtactctctctgttactgcagatgcttataaactgcagacagc 378

                                                                       
Query: 61  atgccgttcatgaatttggctgattttccattgctgctatgaaaattgcaaacaaaattg 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 atgccgttcatgaatttggctgcttttccattgctgctatgaaaattgcaaacaaaattg 318

                                                                       
Query: 121 cttttcattttgctttgacaggcagttttaattttattcatcattttaccaaactgtata 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 317 cttttcattttgctttgacaggcagttttaattttattcatcattttaacaaactgtata 258

                                                                    
Query: 181 acatttcagctatatgcagcttgtcttttgtctttttctgcactatatttatgccga 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acatttcagctatatgcagcttgtcttttgtctttttctgcactatatttatgccga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no098_d16.g1 MSMg01no098_d16.g1 CHROMAT_FILE:
MSMg01no098_d16.g1 PHD_FILE: MSMg01no098_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:16 2005
         (215 letters)



>mm_chr18_13900618_13901232
          Length = 615

 Score =  369 bits (191), Expect = e-107
 Identities = 209/215 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgttaatgaagccaagcccttaggattggtggtaaaaggtcaaatgcttacacaggat 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgttaatgcagccaagcccttaggattggtggtaaaaggtcaaatgcttacacaggat 260

                                                                       
Query: 61  ctcggcataattctgtgattttaggtaccaaggtgactggagaacaatgggtgctgtggt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagcataattctgtgattttaggtaccaaggtgactggagaacaatgggtgctgtggt 320

                                                                       
Query: 121 cttccccagagtcactgggtacaataagattcatctgctaggtattttaggtactccttt 180
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   
Sbjct: 321 cttccccagagtcactgggtacaataagattcagctgctaggtattttaggtactccaag 380

                                              
Query: 181 atgcatgaaagggcagtctgaggtgccattggaaa 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcatgaaagggcagtctgaggtgccattggaaa 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)