Query= MSMg01no098_f05.b1 MSMg01no098_f05.b1 CHROMAT_FILE:
MSMg01no098_f05.b1 PHD_FILE: MSMg01no098_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:24 2005
(584 letters)
>mm_chr18_20237500_20238483
Length = 984
Score = 963 bits (498), Expect = 0.0
Identities = 561/588 (95%), Gaps = 13/588 (2%)
Strand = Plus / Plus
Query: 5 gaattctgtatctgccagcccctcccctccccccccaaataaagctttttaaagcatgca 64
|||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 203 gaattctgtatcagccagcccctcccc---ccccccaaataaaactttttaaagcatgca 259
Query: 65 caatgacaagcggtacaaaagagagacccagcctaggaagatgacccagtaagccaccta 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taatgacaagcggtacaaaagagagacccagcctaggaagatgacccagtaagccaccta 319
Query: 125 gtcatcaacaccatcacagaaacattatttcgagcattggagtgactcaacttggttagc 184
||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 320 gtcatcaactccatcacagaaacatttttttgagcattggagtgactcaacttggttagc 379
Query: 185 agagg-------aaaaaaaaaactgtataaattgttttcaaaggcctaatcaaaacttat 237
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 agagttaaaaaaaaaaaaaaaactgtataaattgttttcaaaggcctgatcaaaacttat 439
Query: 238 atcaaatcacacacactcagacatgtacattcatacacacacacacacacacacacacac 297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 atcaaatcacacacactcagacatatacattcatacacacacacacacacacacacacac 499
Query: 298 acacacattctcatacatactttcagacactcccacacattcacacaccacaaatttgaa 357
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acaca--ttctcatacatactttcagacactcccacacattcacacaccacaaatttgaa 557
Query: 358 ttttgttaaatgtgaattttcttcactttgattgggaaaaacaaatttattaagtgtaaa 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttttgttaaatgtgatttttcttcactttgattgggaaaaacaaatttattaagtgtaaa 617
Query: 418 tgaaaatttctgtgggaactaaaaaggggccagaggaagaggggg-aagggaggatagcc 476
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 618 tgaaaatttctgtgggaactaaaaaggggccagaggaagagggggcaagggaggatagcc 677
Query: 477 cacatctggccagagttcctcctatgctctggacaggcagacgtgggagggctgccagat 536
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 678 ctcatctggccagagttcctcctatgctctgggcaggcagacgtgggagggctgccagac 737
Query: 537 gctttccactctgccctggggtgggcatctaagccactgaccccactc 584
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 738 gctttccactcggccctggggtgggcatctaagccactgaccccactc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_f05.g1 MSMg01no098_f05.g1 CHROMAT_FILE:
MSMg01no098_f05.g1 PHD_FILE: MSMg01no098_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:24 2005
(488 letters)
>mm_chr18_20346347_20347240
Length = 894
Score = 907 bits (469), Expect = 0.0
Identities = 483/491 (98%), Gaps = 6/491 (1%)
Strand = Plus / Minus
Query: 4 cggcagagcccagcttgagtgagtctgcgcagtcctgtggtggaaggatttccttttgct 63
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 694 cggcagagcccagcttgagtgagtctgcgcagtcctgtggcggaaggatttccttttgct 635
Query: 64 tctctgtcttctgctgctgtgggaaacaggcttcttctgtgactcctgcagtctcgggca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tctctgtcttctgctgctgtgggaaacaggcttcttctgtgactcctgcagtctcgggca 575
Query: 124 gatcaaagatctgcagaggtggaggtgctggacggtttcattgccccaggctgattattc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gatcaaagatctgcagaggtggaggtgctggacggtttcattgccccaggctgattattc 515
Query: 184 agtcacaggagattccacccagggaagttgctgagcctgtttgctggctgcttggtagag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agtcacaggagattccacccagggaagttgctgagcctgtttgctggctgcttggtagag 455
Query: 244 acttttaaagagacatcgccccgttcctgtacagaattttacgaaaatgatgcttggaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acttttaaagagacatcgccccgttcctgtacagaattttacgaaaatgatgcttggaaa 395
Query: 304 tgaagtgcatgggacgacttctaattgccatcatccttaaagactgtttaaaggcaaaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgaagtgcatgggacgacttctaattgccatcatccttaaagactgtttaaaggcaaaga 335
Query: 364 atgaacaaggctttgtttttcatccaacagcccgttccaaggg------cacattccaat 417
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 atgaacaaggctttgtttttcatccaacagcccgttccaagggcacattcacattccaat 275
Query: 418 gtgccttataggtggtgttttaaaaccgtgagtggatggagataagttggaaatatgcca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtgccttataggtggtgttttaaaaccgtgagtggatggagataagttggaaatatgcca 215
Query: 478 cgtattactgt 488
||||||||||
Sbjct: 214 tgtattactgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 894
Length adjustment: 10
Effective length of query: 478
Effective length of database: 884
Effective search space: 422552
Effective search space used: 422552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
