BAC Information

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BAC

Clone NameMSMg01-098G09
Chromosome18 (Build37)
Map Location 24,125,564 - 24,125,825
singlet/doubletsinglet
Overlap genenone
Upstream geneNol4, LOC100040579, LOC665797, Dtna, Mapre2, EG665813, LOC100040623, Zfp397
Downstream geneC230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098G09.T7 (MSMg01no098_g09.b1)MSMg01-098G09.TJ (MSMg01no098_g09.g1)
ACCAG314591AG314592
length762774
length of high quality
(start - end)
249 (116 - 364)262 (120 - 381)
definitionCHROMAT_FILE: MSMg01no098_g09.b1 PHD_FILE: MSMg01no098_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:30 2005CHROMAT_FILE: MSMg01no098_g09.g1 PHD_FILE: MSMg01no098_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCNCCCCCCCACATCT
CNNCCATCATAATTGCGGCGCTAATAGATCACTTCAAAAGAGGACCGCGG
AATTCCATTGCCCCATCAACCACGTCTCCTTTCTCAGTTCTACATTTACT
GGACAACTGGTTTGGTTCTGTAGCTTCACTGTAGTGGATCCTGCTGCAGC
AAGCACTGGAGTGCAGGCATCCTTGTGCTCTGTGGACTTGAATCTTCAGG
TGAATGCCCAGGAGTAAGAACAGCTCCATCCTATGGCAGCTTTAACTTTT
GAGAAGCCCCAGCTAGTTTGTGTAGTAGCAACTGTGCTAGTTTACAATCC
AAGATCCAACCGGTATTGTGCTAAGGATTCCCGCTGTCTCCATTCTCCAA
AGCATCATTTGTTATCAGTGTTACTAGTGACTGGGCATTCTGACTGGGGT
GTATGGAATCTCCATGCAGCTGCATTTGCATTTCTCTGATGGCTGGCTTT
GCTAAAAACGTTTTTCATATGCTTATCAGCTTATGGACTAACCCCCTGAA
ATGGTAAACCAGCCTCAATTACATGTTTGAAATACACCTCTGATATACGA
GTATTTCATCTTTTAGCAAACTGCTTATTTTATCAACTCGTTGATGTCTG
TGTCCTTTGCTTTCTTGTTTTTTAGCCTTTCAATTTGCGCGCGTTAGAGC
GCGTGCATGCCTAGTATATGTATTGATTTCTTCTTGTTTTTCAAACCTCA
TCTCCCTCACAC
NNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCAATCCNNN
CTCGATGATAGTGGGTAGGCCTGGAGGCGCCTTTCAAAAAGAGGTAGGTG
AACTATAGATTTCCCGAGGAATTCACTGTAATGCTATATTGTCTTCAAGA
TGTTGTGAAACTTGAATGTGAGAAATACTTATTTTCATGTAACACTTCCT
TTTCCACAGATGAATGAAATGAGTTTTAAATTATTTTTGTTTCAGTGCAA
CTACAGCTCTGCTTCCAAAAAGACAGGCAGGTAACTTGGAAGAAAGACCT
TAAAATTTGAAGTTAGCTGTCTTGACTATCAACTAGTAATCCTATAGCTT
CCCAGAACCCTTGAAAGTTTTAGTTTCCTGGTTTGTAAAATGTATATTTT
TAGAGGATTTTTGACGGAATAAAAACCCTTAAAAGAACTCAATTTATATC
AACTGTATTTAGTAGTTCTTGTTTTGAGATACTGGAAAATTTGAAATAAA
AGGACATGCTATAAGATAGCTGGATTTGACTAGGCCCTTAGGCAACTGTT
TGCATCTTCCTTTTTTCTTTTTTTGCCATTCATACTTATGGGATGAATTA
TTAATTATTCTTATTTGACTTAAAATGAGCAAGGAACTCAGAGTATTTCT
TTCTAAACGCTTTTTTCTTTCCTCACTTACATTTACAATTTGCTTATATT
TAATTATATATTTGCCTAAGTTTATCCCCAACTTATTTTTTATTCCTTTA
TAACCCCTCCATATCTATATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_g09.g1 MSMg01no098_g09.g1 CHROMAT_FILE:
MSMg01no098_g09.g1 PHD_FILE: MSMg01no098_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:30 2005
         (262 letters)



>mm_chr18_24125364_24126025
          Length = 662

 Score =  484 bits (250), Expect = e-141
 Identities = 259/262 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcactgtaatgctatattgtcttcaagatgttgtgaaacttgaatgtgagaaatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aattcactgtaatgctatattgtcttcaagatgttgtgaaacttgaatgtgagaaatact 403

                                                                       
Query: 61  tattttcatgtaacacttccttttccacagatgaatgaaatgagttttaaattatttttg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tattttcacgtaacacttccttttccacagatgaatgaaatgagttttaaattatttttg 343

                                                                       
Query: 121 tttcagtgcaactacagctctgcttccaaaaagacaggcaggtaacttggaagaaagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tttcagtgcaactacagctctgcttccaaaaagacaggcaggtaacttggaagaaagacc 283

                                                                       
Query: 181 ttaaaatttgaagttagctgtcttgactatcaactagtaatcctatagcttcccagaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 282 ttaaaatttgaagttagctgtcttgactatcaactagtaatcctatagcttcctagaacc 223

                                 
Query: 241 cttgaaagttttagtttcctgg 262
           |||||||| |||||||||||||
Sbjct: 222 cttgaaagctttagtttcctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)