BAC Information

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BAC

Clone NameMSMg01-098K18
Chromosome18 (Build37)
Map Location 33,452,761 - 33,452,998
singlet/doubletsinglet
Overlap genenone
Upstream geneBin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4
Downstream geneEG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098K18.T7 (MSMg01no098_k18.b1)MSMg01-098K18.TJ (MSMg01no098_k18.g1)
ACCAG314793AG314794
length677845
length of high quality
(start - end)
238 (88 - 325)85 (186 - 270)
definitionCHROMAT_FILE: MSMg01no098_k18.b1 PHD_FILE: MSMg01no098_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:51 2005CHROMAT_FILE: MSMg01no098_k18.g1 PHD_FILE: MSMg01no098_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCTCCTGTTTACCCTGACTGAGCTCACAGTTTCACC
CTTGGCCTACTTTGTTTATCTCCAGACCAACCCCCGCGTTCAGTCTAGAC
CGTACAGTATTTCCAGTGGCTCCTGTCACTTTTTTCCCCAAGCATCTGGT
TTTCCTCAGCCCCCCCTTGTGACTCACCCTGCATGGCCTTGCTTTAGGAT
CCAAGAACTTCAGTGGAATGTCCTATCCTGTGTGTGCCTCACTGAAGACA
TCTGTTGAAGCCTGAGACCTGGCCTCCAAGGTGTCTTATAACACAATCTA
AACGGGCATATTTTTTGTTTTGTATATAACCAATGCGACACATTTGACTG
TGACTCATTACTTGACTTCATAGCACCCAGGATGCAAGCTCCTGCCCTCC
GGTTCTTCCTGGAATGTCTTACAGTGGGAACATGAATGTCTTATAACAGG
TCTCAGTTACCACACTTACCGTCCCGTAGCTTCCATTGTCTTTATACCAC
TGCTTGCGTTACTTTTGTTTTTTCTTATTTTCCCAAATGCTCATTTTTCT
TTTCTGTGAACAAGTCTTCCTTGATATTCATTGCCCATCCCTACTGTGAG
TGTGCTGTGCCTATTGCCCTTTTCCATGCCCCTCTTTATTTCTGTTGTTC
TGGCTACCTTCCCTTTGTTTTCACGTC
NNNTTTTNNNNNNNNNTTTTTTTTTTTGTCCCTCTNCTCNNNNGTGAACT
TNNAACTATGAAGTGGGAGGCCTGGCGGCCGCCTGGTTCAGCAGATGTGA
GGTGAACTATAGAAGGTTTCAGAAAATCTTTTGTGAAGGGGTGGGGTTTT
GCTTGCTGGTGTGGCTAATGTTCTTCCCCACCTGTTGAGAGCTGTTTTGT
TCCTTTGCATTAAATGCACTTTGGTGCATGCAAGCTCCCCCTCCCTTTAT
AAAACCCTTACACTTGATTACTCTTTCTGGGTTGCTACTGCGGCGCGCTG
TCGGTATGTGTGTGTTGCGTGCCTTGAAAACCCTTCCTCCCTCTCCCCTC
ATTCTTTTTTCCTTTTATTCATCTTTTATTTTTTCCTTTTTCTCTTTCTC
CTAACTTGACCCTTATTTTTTTTTTCCCCCCCCCCCTTTCCTTTCTTTTT
CCTTTTTTTTTTTTTTCTTTCCTCCCCTACTAAACATAAAACTATCTTTT
ATGGATGTGGTGGTGTTTATCTTCCTATTTTCCCCTCCTCCTCCTCTTCG
TCTTCTTTTCTTTTATTATTCTAACTCTCTCTCCATTTCTTCTCTCTTTT
TTTTCCCCTCTCCCTCTCTTCTTAATATTTCTTTTTTCTCCCCATCTTCT
TCTTTTTCTTTCTCCTTTTTTTCACACTATTCTATTGAATATTACATCAT
ATTTCTAGTTTGATCTTATTTTTTTCCACATAATTATAGTCTTAACCTTC
CCCTTTTTCTTCTCCTTTTTGCTCTATCTTCCTCTTACTATTCCTTTTCT
CCACTTTATCACTTTCTTCTATTATTCCCTTTCTCTCCCCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_k18.b1 MSMg01no098_k18.b1 CHROMAT_FILE:
MSMg01no098_k18.b1 PHD_FILE: MSMg01no098_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:51 2005
         (238 letters)



>mm_chr18_33452561_33453199
          Length = 639

 Score =  391 bits (202), Expect = e-113
 Identities = 229/238 (96%), Gaps = 1/238 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcagtctagaccgtacagtatttccagtggctcctgtcacttttttccccaagcatct 60
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 201 gttcagtctagaccgtacagtatttccagtggctcctgtcattttttttcccaagcatct 260

                                                                       
Query: 61  ggttttcctcagcccccccttgtgactcaccctgcatggccttgctttaggatccaagaa 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttttcctcagcacccccttgtgactcaccctgcatggccttgctttaggatccaagaa 320

                                                                       
Query: 121 cttcagtggaatgtcctatcctgtgtgtgcctcactgaagacatctgttgaagcctgaga 180
           ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||
Sbjct: 321 cttcagtggaatgtcctatcctgtgcgtgggtcactgaagacatctgttgaagcctgaga 380

                                                                     
Query: 181 cctggcctccaaggtgtcttataacacaatctaaacgggcatatttttt-gttttgta 237
           |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 381 cctggcctccaaggtggcttataacacaatctaaatgggcatatttttttgttttgta 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 639
Length adjustment: 9
Effective length of query: 229
Effective length of database: 630
Effective search space:   144270
Effective search space used:   144270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)