BAC Information

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BAC

Clone NameMSMg01-098L15
Chromosome18 (Build37)
Map Location 73,524,717 - 73,696,854
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC629684, LOC100043411, LOC100042955
Downstream geneRkhd2, Smad4, Elac1, Me2, Mro, Mapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098L15.T7 (MSMg01no098_l15.b1)MSMg01-098L15.TJ (MSMg01no098_l15.g1)
ACCAG314834AG314835
length685781
length of high quality
(start - end)
273 (43 - 315)332 (135 - 466)
definitionCHROMAT_FILE: MSMg01no098_l15.b1 PHD_FILE: MSMg01no098_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:55 2005CHROMAT_FILE: MSMg01no098_l15.g1 PHD_FILE: MSMg01no098_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,696,606 - 73,696,854)(73,524,717 - 73,524,982)
sequence
CTCCTATCAAAAGAGGATCCGCGGAATTCAAAGTTTCCATGCTCATCACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACTTAAAAAAAAAACATTCTCATTGCCAGGGAACCAGCGAT
GGACCGAGACCCCTGCAGTTACATGCCTGTGTCTTTACCATTCTCTATGA
CGTTTCTTCTTGTTTGCTATGTCCTGGCCTCAAACTGCCCTGCAGGTCTC
TGCTCCATTCCGCAGGGCCCCTTCCTCAGTCCCTCTAGAAGTATTCATCC
TTCTGACAGCGCTCAAAGTCCTAAGCATATATGGAAGTTTACACCCAGCG
TCAGTGGGGGTTAGGAGACAATCGTATTTAGTTACATGCCTAAAATACAG
AACCGCTGCCAGTTGAACAAATCTTGCTCACTAACACTATTGAGTAATTT
ATCCCAAGACTTTCTCCCCTTTATTTATCTTGCCATTGTTCCTCAGGTTT
GTTCTTTAACCCCACACGCGATGCCTGTTTGTTGCTTACTCCTCAGCGCG
TCTTATTGGTATACCAGAGTTAGAAAAAGCATGTTCCATTCCCGATGCAT
TTGTCTTCACTCTGATGCATATTAGACTTTTGCATATTATTTGGTAATAA
TAAATTTCCTCATGGCGTACCTTGTCTTACATGTA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCNNNCCNNCATA
ATCNNNNNNNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACGGGGGTATACA
GATCAGATTGCTAACGTGGGAACTTTTCTCTGTAATTGTTGCAGAGCCAA
AGGAAACAGTTGATACAGAGGAGACATGCACACAGGGAGACAGAAGCATT
GGAATGACAGAGAAATCAGAACTCTGGGACGTCCACAACTTACCTAGCAG
AAAGCAGGGAGTAAGAATCAGTAGAAAGTCACACATTCCCTTCATTACAG
GGGACCCTAAGGTCACCTGCATCTTATACTGATGTGGGTTTAAATGCCCT
GGATTTCTGCCTCACCAGAGTTTGGAGATCACGGGGGACGGGGGGGGGGG
GAAGCTACCTGAACGGTCCAAATTCTGCATAAGACCATTATTATCGTTGT
AGGCTTTCATTAAAATGATATCTGAATTGGAGAGATTAAAGGGTTAATAG
CTATTGCCTCCCCCCCCCCAAGATAAAGAAGCTAATTACTTTTCTTTTAT
ACCCACCACCCCCACCAAAAGCATCTCCCTGGTGGCCTCCTGTTGATGAG
CAACCTCTTTTTAATTTACATTTTAAAACATTATGCACATATCTTGATCC
CTATTCTGTTCTCTGAAAGTTTCTAATGCTTCTGATGTGGACTCTCTGCA
GTTACCACCATAATGGCTAATACCCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_l15.b1 MSMg01no098_l15.b1 CHROMAT_FILE:
MSMg01no098_l15.b1 PHD_FILE: MSMg01no098_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:55 2005
         (273 letters)



>mm_chr18_73696337_73697009
          Length = 673

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 21  cacacacacacacacacacacacacacacacacacacacacacacacacttaaaaaaaaa 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cacacacacacacacacacacacacacacacacacacacacacacacacttaaaaaaaaa 459

                                                                       
Query: 81  acattctcattgccagggaaccagcgatggaccgagacccctgcagttacatgcctgtgt 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acattctcattgccagggaaccagcgatggaccgagacccctgcagttacatgcctgtgt 399

                                                                       
Query: 141 ctttaccattctctatgacgtttcttcttgtttgctatgtcctggcctcaaactgccctg 200
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 398 ctttaccattctctatgacgtttcttcttgtttgctatgtcctggcctcaaactaccctg 339

                                                                       
Query: 201 caggtctctgctccattccgcagggccccttcctcagtccctctagaagtattcatcctt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||
Sbjct: 338 caggtctctgctccattccgcagggccccttcctcagtccctctagaagcaggcatcctt 279

                    
Query: 261 ctgacagcg 269
           |||||||||
Sbjct: 278 ctgacagcg 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no098_l15.g1 MSMg01no098_l15.g1 CHROMAT_FILE:
MSMg01no098_l15.g1 PHD_FILE: MSMg01no098_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:56 2005
         (332 letters)



>mm_chr18_73524517_73525248
          Length = 732

 Score =  484 bits (250), Expect = e-141
 Identities = 262/266 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacgggggtatacagatcagattgctaacgtgggaacttttctctgtaattgttgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacgggggtatacagatcagattgctaacgtgggaacttttctctgtaattgttgcag 260

                                                                       
Query: 61  agccaaaggaaacagttgatacagaggagacatgcacacagggagacagaagcattggaa 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 agccaaaggaaacagttgatacagaggagacacgcacacagggagacagaagcattggaa 320

                                                                       
Query: 121 tgacagagaaatcagaactctgggacgtccacaacttacctagcagaaagcagggagtaa 180
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 321 tgacagagaaatcagaactctgggacacccacaacttacctagcagaaagcagggagtaa 380

                                                                       
Query: 181 gaatcagtagaaagtcacacattcccttcattacaggggaccctaaggtcacctgcatct 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gaatcagtagaaagtcacacattcccttcatcacaggggaccctaaggtcacctgcatct 440

                                     
Query: 241 tatactgatgtgggtttaaatgccct 266
           ||||||||||||||||||||||||||
Sbjct: 441 tatactgatgtgggtttaaatgccct 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)