BAC Information

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BAC

Clone NameMSMg01-099M19
Chromosome18 (Build37)
Map Location 85,962,746 - 85,963,018
singlet/doubletsinglet
Overlap genenone
Upstream geneCyb5, Fbxo15, 1700034H14Rik, LOC100039765, LOC665382
Downstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M19.T7 (MSMg01no099_m19.b1)MSMg01-099M19.TJ (MSMg01no099_m19.g1)
ACCAG315652AG315653
length693694
length of high quality
(start - end)
453 (47 - 499)273 (58 - 330)
definitionCHROMAT_FILE: MSMg01no099_m19.b1 PHD_FILE: MSMg01no099_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:26 2005CHROMAT_FILE: MSMg01no099_m19.g1 PHD_FILE: MSMg01no099_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTTCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAACCATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAATATCAAGT
GACCCTACGTGTGTGGTTTCATTTCTGGGTCTTCAATTCTATTCCATTGC
TCTACTTGTCTGTCCCTATACCAGTACCATGCAGCTTTTTACTCCAATTG
CCCTGCATTATAGCTCTTACTCAGGCCTGGTGATTTTACCAGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTAACAATCAGTTTGAGAAGTAACAATTCAGGAGAATTACCCT
TGTGATTGAAAAAGAGAGGAATACAAATACCTGCACACCAAACACATTGT
GCTCTTTCACTCATTCTTTACAAGATCATTTACAGGCTCTCAGAATCCCA
AGACAGAGATGATACAAGTATACAAGCAAGAACATTGATAGTAGTGAAAA
AAGATACAGTAAAATTTATGGTAAATGTCTGTTAATGATGTGTTTGAGTG
GGACTATAATCAGAGGAAAATAAATTGAATTAAGAGAAGAGGCATTGTGT
TTGACAATAATTGCATATCAAACTTCTAGAGAGAGAAATGACATGATTTT
ACATAAAAATCAGTATTACTTCTATGCACAGACTTTGCATACAGAAAATC
AAGTTGTCATTTTGTTAAATGACAACACGTTCTTAAATACCTCAGTGATT
ATGAACAACGAAACACATGCTTGCATTAATACGCGCATGTACAGACACCA
TCACATGTGAACAAATGCTTGTACATACCACCCTATGCACACAGATGTAC
ATGTTCCACCCCCAAACAAATATTACTATTGCCCCACTTTTCTTCCTACG
GGTTTTTCCTTACCCCCCCACCAATGTTTTGCCGCCCACATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m19.g1 MSMg01no099_m19.g1 CHROMAT_FILE:
MSMg01no099_m19.g1 PHD_FILE: MSMg01no099_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:26 2005
         (273 letters)



>mm_chr18_85962546_85963218
          Length = 673

 Score =  520 bits (269), Expect = e-152
 Identities = 272/273 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaacaatcagtttgagaagtaacaattcaggagaattacccttgtgattgaaaaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctaacaatcagtttgagaagtaacaattcaggagaattacccttgtgattgaaaaagaga 414

                                                                       
Query: 61  ggaatacaaatacctgcacaccaaacacattgtgctctttcactcattctttacaagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggaatacaaatacctgcacaccaaacacattgtgctctttcactcattctttacaagatc 354

                                                                       
Query: 121 atttacaggctctcagaatcccaagacagagatgatacaagtatacaagcaagaacattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atttacaggctctcagaatcccaagacagagatgatacaagtatacaagcaagaacattg 294

                                                                       
Query: 181 atagtagtgaaaaaagatacagtaaaatttatggtaaatgtctgttaatgatgtgtttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atagtagtgaaaaaagatacagtaaaatttatggtaaatgtctgttaatgatgtgtttga 234

                                            
Query: 241 gtgggactataatcagaggaaaataaattgaat 273
           |||||||||||| ||||||||||||||||||||
Sbjct: 233 gtgggactataaacagaggaaaataaattgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)