BAC Information

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BAC

Clone NameMSMg01-100L18
Chromosome18 (Build37)
Map Location 33,046,185 - 33,046,462
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36
Downstream geneCamk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100L18.T7 (MSMg01no100_l18.b1)MSMg01-100L18.TJ (MSMg01no100_l18.g1)
ACCAG316347AG316348
length717698
length of high quality
(start - end)
350 (65 - 414)285 (56 - 340)
definitionCHROMAT_FILE: MSMg01no100_l18.b1 PHD_FILE: MSMg01no100_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:42 2005CHROMAT_FILE: MSMg01no100_l18.g1 PHD_FILE: MSMg01no100_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCCGTATTC
TCACCTGTATCCATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
CTGGACATAGTACTACCGTAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTACCCCACAATAGCCAGAAGCTGGAAAGAACCTAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCCTCCTGAGTGAGGTAACTCATTCACAAAGAAA
CTCGTACAATATGTATTCTCTGTATAGCGGGTATTAGTCCCCAACCTTGG
TATACCCCATATCTTACATATATTTCCGCAAAGCCATGACCCTCTTCATG
AATGATTACTGACGTGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATTGGTTTGGGGAAAAGGCAAGTGGAGTATTGGCTCAGAGGCTGG
GGAGCGAGAAAAAGAATTGACATTTCTAACTGATTCTCAGCTCTAACCAT
GGCTGTTGCTTCTAAACACCATCCTAAATATTTTCTTCATGCGGTGATAC
ACCAGATTTTCATGACAGTTTTTCTTTCTCAAAATATTTTATTTCCTATA
TTGTCTCTCCTGCTTAATATACCCAATGAATTTTTTGCCTTTTGTTTTGT
TCTTCTGTTTTGAGACAGGCTCTTGTGTATCCCACATTAGCTTCATAGTC
TCTATGCCCCTAAGAGTGGCCTTGAGCTCCTGATCCTCCTGCTTCTGCCC
TCAGAGTGCTTAGACTTATAGGCATATACACCTTAAGGATGTATCACTGG
ATCACATGGTATAGAGGATCGCACCGGGGTATTCCGCATGCCAGGCTACC
ACTCTACCTGCCTTCCCCCCCCCCCCCAAACCAATGAATTCTTACCTAAA
ATTTTTTTAATGAATTTTTTTGATCTATTTTCAGAATTTCAATATTTCTG
TAAAGATTCCCCAACTTCTCATCCATTTTCTTTTCCTACTTCTGCCAACA
CATTGTTAGCAATTATATGTTGTATTAGAATTCTATACCTCATGGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_l18.g1 MSMg01no100_l18.g1 CHROMAT_FILE:
MSMg01no100_l18.g1 PHD_FILE: MSMg01no100_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:42 2005
         (285 letters)



>mm_chr18_33045985_33046662
          Length = 678

 Score =  451 bits (233), Expect = e-131
 Identities = 270/285 (94%), Gaps = 7/285 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggtttggggaaaaggcaagtggagtattggctcagaggctggggagcgagaaaaaga 60
           |||||||||||| ||||||||||||||||   |  |||||||||||||| ||||||||||
Sbjct: 478 attggtttgggggaaaggcaagtggagta---g--cagaggctggggagggagaaaaaga 424

                                                                       
Query: 61  attgacatttctaactgattctcagctctaaccatggctgttgcttctaaacaccatcct 120
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 423 attgacattcctaactgattctcagctctaaccatggctgttgcttctaaacaccaccct 364

                                                                       
Query: 121 aaatattttcttcatgcggtgatacaccagattttcatgacagtttttctttctcaaaat 180
           ||||||||||||||||| |||||||||||||||||||||  ||||||| |||||||||||
Sbjct: 363 aaatattttcttcatgctgtgatacaccagattttcatg--agtttttttttctcaaaat 306

                                                                       
Query: 181 attttatttcctatattgtctctcctgcttaatatacccaatgaattttttgccttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 attttatttcctatattgtctctcctgcttaatatacccaatgaattttttgccttttgt 246

                                                        
Query: 241 tttgttcttctgttttgagacaggctcttgtgtatcccacattag 285
           ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 245 tttgttcatctgttttgagacaggctcttgtgtatcccagattag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 678
Length adjustment: 9
Effective length of query: 276
Effective length of database: 669
Effective search space:   184644
Effective search space used:   184644
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)