BAC Information

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BAC

Clone NameMSMg01-101F01
Chromosome18 (Build37)
Map Location 28,901,700 - 28,902,281
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101F01.T7 (MSMg01no101_f01.b1)MSMg01-101F01.TJ (MSMg01no101_f01.g1)
ACCAG316759AG316760
length827707
length of high quality
(start - end)
49 (125 - 173)582 (79 - 660)
definitionCHROMAT_FILE: MSMg01no101_f01.b1 PHD_FILE: MSMg01no101_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:29 2005CHROMAT_FILE: MSMg01no101_f01.g1 PHD_FILE: MSMg01no101_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGGGGTTTATTTGGGTTTTTTATACCACCTATCCCCCTTTATCCC
CCCCTCATAATTGCGGCCGCTAAACGACTCCTATTTTCAGAAGAGCGCGG
AATTCTTTACATGTGCTATTTTACACTGAACACATTTCATACACTTTGGG
TAACTGCAATGTGAACATTTCTGACTCATGTGATTCCAACCCCTTTGTCT
ATCACTGACTATACATGAAATGGGTACCATATATTCCCTTGTTTTTCCTG
CTCAAGTTTGTCTATCTCTTCCCTTACGACATGGGAGTGCACCATAAAAA
AGCGATATGCAAAATTGCCCTTTTTCTTTCTGGCAAAGACTGAACAAAAA
TTAGCTATTATCTCTGACTTCCTTTTTTATAAATCTCAAAATTTCTTTGT
GCAAGTGTAAATTGATTAAATTTTAGTTAAATAATAAGTATTGTTTCTTC
TCCATGAAATACATACGGACTTACACTGAAACAAAACTCAATAAGGTAAA
TCATTAATACTTATGTCTATTTCTCCTTTTGTTTCCAGCTTACTACACCA
TATTTCCCCATTTATCACACATAACATTCAAATGATGGTCGTGACCTCTC
CCCTCTCCCTCTACCTACCCCCCGAATCCACAAGCACCCCCCGGCTACAG
CTCTACCGCTCTTCACACAATCACTCACTCATGATTCGCGACCACTTAGA
CAGCACCACACATGATTGTGGCAAAAAAAACATATCCAGTTAAACTTTCC
ATTCTTGCTACCTCATGTTCTTTTTATACTTAATCGATTTCCATCTCGGT
CCATTACGCTTCTCAAAACACGATCCC
TCCTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAATGGACAAGGGTAGTGG
AACTATTTAGACTTTAAATGATCTAATTTTTAGAGGCTATTGTCAGACAA
GTAAATAGCACTTTCTACTCTTGCATCATAAACAAATTCATTTAATATTT
TTGACAGAGATGATATAAGTGGCTATTACAAGGAATGGGTTAACAATTGA
TTAATAAAATCTGACATGTTATTGTTACATAGGTGTTCTGATTATGGAGG
GATAGATGAATGGATAACAGAACTGGAATTACTTATTGATAGTAAGTATA
CGATAAATGCAAATTACAGGAGGTGGACTTCCAATTTGAAAAATCCTATT
CTGCAATCACAATTATAATGACAGGGTGTCAATACGTACAGATGAGAGTT
TGTGTCATTAAGTACATTCAGACACTTTAATTTATTAACTGATTCAATAT
TTATTATGTACATAATGTATACAGACTATTTTTCTTAGGTGTAGGTCACA
CAACAGTGAACATGGTTTCTACTCTCTTGTTACAATTAAAACCAGTATCC
CCCATTGTAGCTTTCAAACCCCCTGCATACACACTTCTTCTTCTGCTGCC
CAGTGATGTAGGTAAGAGAAGGCGATTTTTGAGCGAAGACACACAGGATC
TGAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_f01.g1 MSMg01no101_f01.g1 CHROMAT_FILE:
MSMg01no101_f01.g1 PHD_FILE: MSMg01no101_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:29 2005
         (582 letters)



>mm_chr18_28901500_28902481
          Length = 982

 Score = 1056 bits (546), Expect = 0.0
 Identities = 573/582 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaatggacaagggtagtggaactatttagactttaaatgatctaatttttagaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaatggacaagggtagtggaactatttagactttaaatgatctaatttttagaggct 260

                                                                       
Query: 61  attgtcagacaagtaaatagcactttctactcttgcatcataaacaaattcatttaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgtcagacaagtaaatagcactttctactcttgcatcataaacaaattcatttaatat 320

                                                                       
Query: 121 ttttgacagagatgatataagtggctattacaaggaatgggttaacaattgattaataaa 180
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgacagagatgatgtaagtggctattacaaggaatgggttaacaattgattaataaa 380

                                                                       
Query: 181 atctgacatgttattgttacataggtgttctgattatggagggatagatgaatggataac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgacatgttattgttacataggtgttctgattatggagggatagatgaatggataac 440

                                                                       
Query: 241 agaactggaattacttattgatagtaagtatacgataaatgcaaattacaggaggtggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 agaactggaattacttattgatagtaagtatacgataaatgcaaattacaggaggcggac 500

                                                                       
Query: 301 ttccaatttgaaaaatcctattctgcaatcacaattataatgacagggtgtcaatacgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ttccaatttgaaaaatcctattctgcaatcacaattataatgacagggtgtcaatacata 560

                                                                       
Query: 361 cagatgagagtttgtgtcattaagtacattcagacactttaatttattaactgattcaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 cagatgagagtttgtgtcattaagtacattcagacactttaatttatgaactgattcaat 620

                                                                       
Query: 421 atttattatgtacataatgtatacagactatttttcttaggtgtaggtcacacaacagtg 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttattatgtacataatgtgtacagactatttttcttaggtgtaggtcacacaacagtg 680

                                                                       
Query: 481 aacatggtttctactctcttgttacaattaaaaccagtatcccccattgtagctttcaaa 540
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 681 aacatggtttctactctcttgttacaattaaagccagtatcccccattctagctttcaaa 740

                                                     
Query: 541 ccccctgcatacacacttcttcttctgctgcccagtgatgta 582
           ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 ccccctgcataaacacttcttcttctgctgcccagtgatgta 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)