BAC Information

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BAC

Clone NameMSMg01-101O18
Chromosome18 (Build37)
Map Location 6,445,293 - 6,445,670
singlet/doubletsinglet
Overlap geneEpc1
Upstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152
Downstream geneLOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, Mpp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101O18.T7 (MSMg01no101_o18.b1)MSMg01-101O18.TJ (MSMg01no101_o18.g1)
ACCAG317206AG317207
length791783
length of high quality
(start - end)
379 (128 - 506)507 (127 - 633)
definitionCHROMAT_FILE: MSMg01no101_o18.b1 PHD_FILE: MSMg01no101_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:20 2005CHROMAT_FILE: MSMg01no101_o18.g1 PHD_FILE: MSMg01no101_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNTTTTNNNNNNNTTTTTTTTCTCTTCCTCCCCNNNCNCACTA
TTCAGNNGATATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAG
AGGAGCCGCGGAATTCAAGCTTTTCACATACAATGTCATGGAGAAAGGCC
ACCTTCCAGAAAAGATTCTGTATTAGAAAGCCCTTGAAATAAGCTTAGGG
TCTCGTAGACTTACACAAAGTAACAATAACCACTGCACAGGACTGCAGTC
CTTTCCATATCAAACGCAATAATTCTTTCTATCTACAGAACTTCTGTTGC
TTACAAAAATAAAGCAGACTGTTACAGGTAGTTTGAGTTTAGAAAAATAA
CTTACAATGATGTTGATTTCAATTTTACTGTTTTCTAAGATTTCAAGTAC
TAGCGACATCTCTGTTGTAGGAGTTTTAAGCGTTTCTGAATCATCTAGAC
ACTCATACCCTCTCCCCTGTCTGTCTGTGTCTCTTTTGCTCTCTGAGAGA
GACAGTGTGCATCATGAGGACAAAGAACAACTTGTGGGAGTTGATTCTCT
CCTTTTACCACGTGGGCTCTAGGGATAGAATTGGGATGGCATGCTTGGCG
GAATGGACCCTTTACCCTATTAAGCCATGTTGCTTTGAAGACCTTGTATG
ATGGGCTCATCCAATTATTGTAGTTTGATAACCCTCCCATTTCAAATGTA
CAGAACAGATGGATTTCTCAACCACTGAGATTAAATCTGAAAAAATGCTA
TTAAAGCTTAATAACAGCCCTAAAAAACTATTTGTATACTG
NNNNNNNNNNNNNNNTTTTNNTTTTTTTNNNCCCCCCCNTNCCCCTATTA
CCTATNTTCGATGAAGTGGGTGGCCTGGCGGCCGCCTGTTCAAAAAATGG
AGGTGAACTATAGAATTTTCAGCGGAATTCTCACCTGAGGAATACCGAAT
GGCCGAGAAGCACCTGAAAAATGTTCAACTTCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCAGTTGTTGGTGGGATTGCAAGCCTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCATATTTATTGGACATAGTACTACTGGAG
GATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCATATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATTCATC
CTGAGTGAAGTAACCTAATCACAAAGGAACTCACACCATATGTAACTCCC
TGATTAATGGATATTATTCCAGATACTTAGGTAACCCAATATATAAGATA
CAACTTGCTAAACGAATGAAATTCAAGAAGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_o18.b1 MSMg01no101_o18.b1 CHROMAT_FILE:
MSMg01no101_o18.b1 PHD_FILE: MSMg01no101_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:20 2005
         (379 letters)



>mm_chr18_6445093_6445870
          Length = 778

 Score =  640 bits (331), Expect = 0.0
 Identities = 367/383 (95%), Gaps = 9/383 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacaatgtcatggagaaaggccaccttccagaaaagattctgtattagaaagcccttga 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacaatgtcatggagaaaggtcaccttccagaaaagattctgtattagaaagcccttga 260

                                                                       
Query: 61  aataagcttagggtctcgtagacttacacaaagtaacaataaccactgcacaggactgca 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataagcttagggtttcgtagacttacacaaagtaacaataaccactgcacaggactgca 320

                                                                       
Query: 121 gtcctttccatatcaaacgcaataattctttctatctacagaacttctgttgcttacaaa 180
           ||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gtcctttccatatcaaatgcagtaattctttctatctatagaacttctgttgcttacaaa 380

                                                                       
Query: 181 aataaagcagactgttacaggtagtttgagtttagaaaaataacttacaatgatgttgat 240
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 aataaagcagactgttacagatagtttgagtt-agaaaaataacttacaatgatgttgat 439

                                                                       
Query: 241 ttcaattttactgtttt----ctaagatttcaagtactagcgacatctctgttgtaggag 296
           |||||||||||||        |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcaattttactg----gaagctaagatttcaagtactagcgacatctctgttgtaggag 495

                                                                       
Query: 297 ttttaagcgtttctgaatcatctagacactcataccctctcccctgtctgtctgtgtctc 356
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttttaagtgtttctgaatcatctagacactcataccctctcccctgtctgtctgtgtctc 555

                                  
Query: 357 ttttgctctctgagagagacagt 379
           |||||||||||||||||||||||
Sbjct: 556 ttttgctctctgagagagacagt 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 778
Length adjustment: 9
Effective length of query: 370
Effective length of database: 769
Effective search space:   284530
Effective search space used:   284530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)