BAC Information

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BAC

Clone NameMSMg01-102A14
Chromosome18 (Build37)
Map Location 35,081,613 - 35,081,806
singlet/doubletsinglet
Overlap geneEtf1
Upstream geneEpb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1
Downstream geneHspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102A14.T7 (MSMg01no102_a14.b1)MSMg01-102A14.TJ (MSMg01no102_a14.g1)
ACCAG317291AG317292
length700749
length of high quality
(start - end)
190 (120 - 309)162 (121 - 282)
definitionCHROMAT_FILE: MSMg01no102_a14.b1 PHD_FILE: MSMg01no102_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:29 2005CHROMAT_FILE: MSMg01no102_a14.g1 PHD_FILE: MSMg01no102_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTGCGGCGCTATACGACTCCTATTTCAAGAGGAGGGCGGAATTCTCT
TCTTTTCTTACACAGAGGATTAACTTCTGGGAGACACAGAAGAAAAACTT
GTAAATGGTGTAGATCCACAGAGCAAATACAACCCGGTCAAACTAAAGCA
GCAAAACTCAGAAAGGAAATATTTAGACAGCCAGTAGCTTTCCCTTTCCT
CAAGAACAGGGAAGTTTCTCTACCTAGGTCAACAGCCCAACACTACCTAC
TGGAATATTCCACCAGGAAGCTGGAATCTTTTCCTAATCTTCTCAAAACA
ATGAGATACAAGGAGTTCAGCGATAGATGGATCACAGTTAGTGCTCTAGG
CGGTTAATTAGCAATGAAAACCCTTCTTGTGACCCATGTGGAAGCATTTT
GAAATAAGACAGAAGTCACAATTCTCCCACTAATTGTCTTTTTAACATAC
ACTTTCATCAAGATTTCCATCATCACCAGATGTTCATGAAAAACCGAGCT
GGAGAAAAATCTCTGGCCGCTCTTCCAGAAGATTAGGGCTCCTTTCCCTG
CACCTGCATAGTGGCCCATAACTGTTATTCTAGTCTCGAGGAGCTCTGAT
ACCCTCTCCTGGTCTCTGCAAGCCACAACACGGTGCATATGAACATCTAC
CTTTATTCTATTACTCTCAATAACACACTAATTTCGTTGCTTCCCCATGC

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAGGACAGCCCAGTGAGACTCTGTCTCAAAAA
AAGCAAAAACTGTAACCCGGTGGTGACACAGACCCAACACTAGTAAGGTA
GAGGCAGGCAGATCTTTGTGAATTCAAGGCCAGTCTGGTCTATAGAGCCG
GTTCTAGGACAGCCAGGGCTATATAAAGAATCCCTGTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATCTCTCTCTCTTTTTC
CCTCATACCCTTTATTTTTTACTCTGCCTATCCCCTTTCCTCCCCTTCAA
ATTTTTTCTATTTCCCCCCCCCCGCCCCTGGGTATTTAGTTGATTACCTT
ATCACCTTTTCCTTCTTTAAAAAAAAAAAAAAACCCTCCCGGGGGGGGGT
GTGCCCTTTTATTTATCCCCCTATCATCCCTCATTCCCTCCATTCCTTCC
CTCTCAACTCTTTACTTTTTTCATTGCCTCCCCGTCCCCTTTGTCCCATA
CACTTTTACTCTCCTCGCGTCCCTTCTCTTTTTCTCTTTTTCTCACGAAT
CAGACCATTCTGATTACCGTTCTCTTTTGTCTTAATTTTATTCACCTCTT
TCCTCTCCTACCCCATATATTTCCGTCTCACTTCCATTCCCCTCCTTCTT
CCTCCTCATCTCTCTTTCTATTTTCCCCTTCTTTCCTCCCATCGCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_a14.b1 MSMg01no102_a14.b1 CHROMAT_FILE:
MSMg01no102_a14.b1 PHD_FILE: MSMg01no102_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:29 2005
         (190 letters)



>mm_chr18_35081413_35082006
          Length = 594

 Score =  356 bits (184), Expect = e-103
 Identities = 190/194 (97%), Gaps = 4/194 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcaaatacaacccggtcaaactaaagcagcaaaactcagaaaggaaatatttagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcaaatacaacccggtcaaactaaagcagcaaaactcagaaaggaaatatttagaca 260

                                                                       
Query: 61  gccagtagctttccctttcctca----agaacagggaagtttctctacctaggtcaacag 116
           |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||
Sbjct: 261 gccagtagctttccctttcctcactcaagaacagggaagtttctctacctaggtcaacag 320

                                                                       
Query: 117 cccaacactacctactggaatattccaccaggaagctggaatcttttcctaatcttctca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaacactacctactggaatattccaccaggaagctggaatcttttcctaatcttctca 380

                         
Query: 177 aaacaatgagatac 190
           ||||||||||||||
Sbjct: 381 aaacaatgagatac 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 594
Length adjustment: 8
Effective length of query: 182
Effective length of database: 586
Effective search space:   106652
Effective search space used:   106652
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)