BAC Information

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BAC

Clone NameMSMg01-102G08
Chromosome18 (Build37)
Map Location 18,329,625 - 18,329,949
singlet/doubletsinglet
Overlap genenone
Upstream gene4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102G08.T7 (MSMg01no102_g08.b1)MSMg01-102G08.TJ (MSMg01no102_g08.g1)
ACCAG317552AG317553
length696701
length of high quality
(start - end)
326 (74 - 399)243 (76 - 318)
definitionCHROMAT_FILE: MSMg01no102_g08.b1 PHD_FILE: MSMg01no102_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:58 2005CHROMAT_FILE: MSMg01no102_g08.g1 PHD_FILE: MSMg01no102_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGGGCGGAAT
TCAAATCCCATCCCTGCATGGTGGCTCACAACCATTCGTATGAGATCTGA
TGCCCTCTTCTGGGGTGTCTCAAGAAAGCTATATTGCATTTGCATATAAT
AAATAAATACATCTTTAAAAAAAAGAAAAGAACTAAAAAATTTTTGTCAT
TAAAAACAGATAGATATTAGAAAGTTTCAACCATTATTAAATAAAAAAAT
AATTTGGCTTAAACAAGTGTAGTACAAATGATTCATTTTCAAATTTTTAT
AAATATTACTTGTAACTTAAGATTTAATGTGTATATACATATATGCATGT
AATAAGTAGTGATTAAAAAAGGCCATGAATTTGAACATGTGTTTGTGATG
GGTATAGAGGGGGCACCCAAAGAAGATGGTCTAAATGTTGTAATTAAATT
ATAATATCTCCATATAAACAATTATATAAATTCGACCAATTTCTGGCAAT
ATAATAACATTATATAAACACCATTTGGTTCTAGAGCACCTGATTCCCTA
ACAACTAGGTATCCGAACAGAATTATGTATTATACATCTCTCCCATATTC
TCTTACGGTAAAATATCATCACAATCACATAAATGACCTGTTTACTGCTT
TTCCCTGTTAGTCTGAATATATGCCTAAACCATCTCATCACGTCCC
AATGCAGTGAGAGGACTGGCGAACGCCTGGCTTCATAATACAGGTGACCT
ATAGAAGGTCTCAGAAATTCAACAACCACTTTCATCAATTGACAGATCCT
GGAAACAGAAACTAAACAGCCACACAGTGAAACTAACAGAAGTTATGAAA
CAAATGGACTTAACAGATATCTACAGAACATTTTATTCTAAAACAAAAGG
ATATACCTTTTTCTCAGCACCCCATGGTACCTTCTCCAAAATTAACCATA
TAATTTGTCACAAAACAGGCCTCAATAGATAAAAAAATATTGAAATTGTC
CCATGCATCCTATCAGATTACTCATGGACTAAGCCTGATCTTCAATAAAA
ACATAAATAATAGAAAGCTAACATTCACGTGGAAACTGAACAACACACTT
CTCAAAGATAGCTTGGTCAAGGAAGAAATAAAAAAAAAATTAAAGACTTT
TTATAGTTTCATGAAAATGAAGACACCCCACACCCCATTTTATGGGACAC
AATGAAAGCATTTCTAACAAGGAAACTCATAGCATTTGAGTGCCTCCCAA
AAGAAACTAGAGAGAGCACACTCTATCAGCTTGACAACTCTCCTAACATC
TCTACATCACAATTAACAACATTCATCCTATTACGAGTATACCGTAAACA
TCAATCTAACTCATGTGTCAAAATCAACCACCGGCCAACTCACGAACAAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_g08.b1 MSMg01no102_g08.b1 CHROMAT_FILE:
MSMg01no102_g08.b1 PHD_FILE: MSMg01no102_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:58 2005
         (326 letters)



>mm_chr18_18329240_18329964
          Length = 725

 Score =  526 bits (272), Expect = e-154
 Identities = 314/328 (95%), Gaps = 5/328 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcacaaccattcgtatgagatctgatgccctcttctggggtgtctcaagaaagctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gctcacaaccattcgtatgagatctgatgccctcttctggggtgtctcaagaaagctata 651

                                                                       
Query: 61  ttgcatttgcatataataaataaatacatctttaaaaaaaagaaaagaactaaaaaattt 120
           ||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct: 650 ttgtatttgcatataataaataagtacatcttt-aaaaaaagaaaaggactaaaaaattt 592

                                                                       
Query: 121 ttgtcatt-aaaaacagatagatattagaaagtttcaaccattattaaataaaaaaat-a 178
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 591 ttgtcattaaaaaacagatagatattagaaagtttcaaccattattaaataaaaaaataa 532

                                                                       
Query: 179 atttggcttaaacaagtgtagtacaaatgattcattttcaaatttttataaatattactt 238
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 attt-gtttaaacaagtgtagtacaaatgattcattttcaaatttttataaatattactt 473

                                                                       
Query: 239 gtaacttaagatttaatgtgtatatacatatatgcatgtaataagtagtgattaaaaaag 298
           ||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 472 gtaacttaagaataaatgtgtatatacatatatgcatgtaataagtagtgatgaaaga-g 414

                                       
Query: 299 gccatgaatttgaacatgtgtttgtgat 326
           ||||||||||||||||||||||| ||||
Sbjct: 413 gccatgaatttgaacatgtgtttctgat 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space:   226972
Effective search space used:   226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)