BAC Information

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BAC

Clone NameMSMg01-102J11
Chromosome18 (Build37)
Map Location 33,327,505 - 33,327,749
singlet/doubletsinglet
Overlap geneCamk4
Upstream geneMap3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36
Downstream geneStard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102J11.T7 (MSMg01no102_j11.b1)MSMg01-102J11.TJ (MSMg01no102_j11.g1)
ACCAG317692AG317693
length691764
length of high quality
(start - end)
454 (72 - 525)244 (120 - 363)
definitionCHROMAT_FILE: MSMg01no102_j11.b1 PHD_FILE: MSMg01no102_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:13 2005CHROMAT_FILE: MSMg01no102_j11.g1 PHD_FILE: MSMg01no102_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAAT
TCCAATGTCACCCTTTTGCAAGAAATAACAATACAATAGTGAAATTCCTG
TGGGATCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACA
CACACACACACACAGAGTCTCAAATGGGCAAAGCAATGCAATGCATAAAA
TGAACAAAGCCAAAGTCAGCATCAGACTTTACTTAATTTTTAAAAAATGC
CAGAAAATAGTAATCAAAACAACATGATATAGTGATAAACAAAAACAAAG
AGACCCCTAGAACAGAATAGATACCCTAGACATCCACACATTTGAGGTAA
GGTAAACATGCCAAGAATACACAACAGGGGCAACATGATATCTACAGCAA
ACAATGTCCTGAAACCTTTATCTCTTCATGCAGAAATGAAATTAACACTG
GAAAGATGGCTCAGCAGATAAAGGCACTTACCCTCTGAGTCTGACAATTT
AAATTCAGCTCCTGGACCCAACGTGGAAGGCAAGAGAACTGGCTCCTGTA
GGTTGCTCTCTGACCTCCACATGTGTGTGCATGCATGTATATACACACAC
ATACATACATACCCACACACACGCGAAGAGATGTAAATGAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNNNNCTTTTGGGG
NCTCGCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCCGCGGAATTCCTTGGAACAGCCTGTCAGGACCCAG
TGTTCTCTTTTTAAAGCTCACTGACTCCTATAAGCCAAGACCGGTGTATG
CTAGAACACAATGGTGTTGGTGGGACAGATATTAAGCCTGTTTTTGTGAG
CCAACCTACTTCCTAGTCTGTTGGCATCCTGTTTTGTGCGCAGCCATAGC
CAACTTTGTAGGAAAAGCTTTCTATATAACACCATGTTTACCTAGTTAAA
AAACAACAAAACATAACTCTTACAAACAAACAAAAAACAAAAAACATGGC
AGTACAATCTTTATTTGGAAATCTAACTGGGTCTTTGAAAGGTTTTACAA
GATTTCTCTATCATTTACTTTTATAGCTTAACTTGTAAAAGTCTATTCTG
CATTCCCAGAACTGACTATTCATATCCAGAAAACTTGAAACTCTTGATAA
TTATCACATAGCAAAAAGTCCAAAGATCAGTGCTTGTTAAAGAGAATAAG
TATATCACACGAAAGAGTTCTTCCAGAAATGTTGTTTTTCCTAAGGCCTC
ACACCCAATTCTCATATAATAGCACTTATTTTAGTAAGATAGAAAAGTTG
TAAGCATCTGAATAAAAAGGTTAACATTTTTTGTAATTAACCGTTATAGT
GGTGATAAAAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_j11.g1 MSMg01no102_j11.g1 CHROMAT_FILE:
MSMg01no102_j11.g1 PHD_FILE: MSMg01no102_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:14 2005
         (244 letters)



>mm_chr18_33327305_33327949
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattccttggaacagcctgtcaggacccagtgttctctttttaaagctcactgactcct 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 gaattccttggaacagcctgtcaggacccagtgttctcttttaaaagctcactgactcct 386

                                                                       
Query: 61  ataagccaagaccggtgtatgctagaacacaatggtgttggtgggacagatattaagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataagccaagaccggtgtatgctagaacacaatggtgttggtgggacagatattaagcct 326

                                                                       
Query: 121 gtttttgtgagccaacctacttcctagtctgttggcatcctgttttgtgcgcagccatag 180
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 325 gtttttgtgagccaacctacttcctagtctgctggcatcctgttttatgcgcagccatag 266

                                                                       
Query: 181 ccaactttgtaggaaaagctttctatataacaccatgtttacctagtt-aaaaaacaaca 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 ccaactttgtaggaaaagctttctatataacaccatgtttacctagttaaaaaaacaaca 206

                
Query: 240 aaaca 244
           |||||
Sbjct: 205 aaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)