BAC Information

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BAC

Clone NameMSMg01-103A08
Chromosome18 (Build37)
Map Location 47,285,590 - 47,285,838
singlet/doubletsinglet
Overlap geneLOC667120
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438
Downstream geneSema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103A08.T7 (MSMg01no103_a08.b1)MSMg01-103A08.TJ (MSMg01no103_a08.g1)
ACCAG318008AG318009
length705707
length of high quality
(start - end)
249 (66 - 314)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no103_a08.b1 PHD_FILE: MSMg01no103_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:47 2005CHROMAT_FILE: MSMg01no103_a08.g1 PHD_FILE: MSMg01no103_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACTTTCTGGAGGCTGGCTTGAGAGGACTGTGGGTTCAAGGTCA
GCCTTATATAGCAAGACCTTATCTTCTCCGCAACACCACTCCCAAGAAGT
TTGGGAAGAGGAGCTGGGACAAAAATTTACTTCATTTTATTCTAGTATTT
TTAGTGCCTGGACCACTACAGGACACAGAGTAGAGTCCAGTATGTAATCC
ATGCATCCATCACCAATAGTCACAGCCTGAGGAGATGGAAAGGATGTGCT
TTCGCCCTGCACTGTATATTTTTAAGCTGGGGAAGAATGGCCCATTGGAG
GCTCAGTCCCCTTCTCTCCAGAGACATTATCTATCCCAAAAGATTACACT
CCACCTTTCTAACGAAACTTGAGGCTTTATTGCTGCATTTGATCAGGCAT
GTTTGTGTGCCTCTCCCTCTATTTTGCCCTCGCTCTCCTCCCCTTTCTCC
CTCTCCACTTCATCTTTATTTGCCTCTTTCTGCTTTTCTCTTCCCTGGTT
TAACTGTCCAGAGTACATACAGATGTGAGATTGATCCATACTTACTCCTT
TCTTGATATAGTTTCCGTATGGTCCATTGAGGGTTTTTTCGCTCCATTTT
TGTTCTATCTGTTTAAACCCCCCCTCTCCCCGTTTTTACCCTTCCTTGTG
TTACC
AAACACGATGAAGTGGTAGCCTGGCGGCGCCTGTTCACAAXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTCTTTTGTGTTGAAACCTGTTAAT
GGGACTTACCTTTGAGGTTTTTGTTTTACTTTCTAAGTTTTTCATTTCTA
GTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCTGATTCTATTTCTT
TGTTAAATTCTATTTCATGTCTTGAAGTATTTTCCATTATTTCATTCGGC
TGTTTATGTTTTCATGAAGACATTTATTTACATTTCCCCTAATGGCTCTT
GAGCATACATAATTGCTGTTTTGTAGTGCTTCAGCTAAATGGCTTTTCTC
ATGGCCTGTTGCACTACGCTGGCTTCCTTTGTTTGTGTTTTTACACTGCA
ATCTAGGTATCTGGCTAAAGATATCTGAGGTATCTGGCTCTTGTTGCCTG
ATGTCTTTTGGTTGCCATTGCCCATTCTGTTTCTCGACCATATTGTGTCT
GTTTTCTTGCCTTCCCCGCTATATAATGGATCTGCAGATTAAACGCCATT
ACCACAATCTTTTTTTTTTTTCCACCCCCTCTATTTTATATCTTTCTTAC
CAACCACGTTTATACAACAACCTCCCCCACTCTCCCTCTTTTCCGCCCCT
TTCCATATTTTTTCTTATTCCCACATTTCCCCCCCCCCACCTTCCCCTTA
TTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_a08.b1 MSMg01no103_a08.b1 CHROMAT_FILE:
MSMg01no103_a08.b1 PHD_FILE: MSMg01no103_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:47 2005
         (249 letters)



>mm_chr18_47285331_47285979
          Length = 649

 Score =  427 bits (221), Expect = e-124
 Identities = 242/249 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggctggcttgagaggactgtgggttcaaggtcagccttatatagcaagaccttatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaggctggcttgagaggactgtgggttcaaggtcagccttatatagcaagaccttatctt 449

                                                                       
Query: 61  ctccgcaacaccactcccaagaagtttgggaagaggagctgggacaaaaatttacttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctccgcaacaccactcccaagaagtttgggaagaggagctgggacaaaaatttacttcat 389

                                                                       
Query: 121 tttattctagtatttttagtgcctggaccactacaggacacagagtagagtccagtatgt 180
           ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 388 tttattctagtatctttagtgcctggaccacaacaggacacagagcagagtccagtatgt 329

                                                                       
Query: 181 aatccatgcatccatcaccaatagtcacagcctgaggagatggaaaggatgtgctttcgc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||  |
Sbjct: 328 aatccatgcatccatcaccaatagtcacagcctgaggagatgggaagcatgtgcttttac 269

                    
Query: 241 cctgcactg 249
           |||||||||
Sbjct: 268 cctgcactg 260


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)